View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_high_65 (Length: 204)
Name: NF3083_high_65
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 8664602 - 8664429
Alignment:
| Q |
17 |
aaaataagaaagaggtgttcaaggactgtttggataagttcaaaagtatctaaaagccactgtccagattgatttacgtgtgtgaattttgaaataatta |
116 |
Q |
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| T |
8664602 |
aaaataagaaagaggtgttcaaggactgtttggataagttcaaaagtatctaaaagccactgtcgagattgatttacgtgtgtgaattttgaaataatta |
8664503 |
T |
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| Q |
117 |
tgaaccatactatctaaatatagtttaatgtttgtttatttccagttattgaattgatctttgtactcagtttt |
190 |
Q |
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| T |
8664502 |
tgaaccatactatctaaatatagtttaatgtttgtttatttccagttattgaattgatctttgtactaagtttt |
8664429 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 8673596 - 8673689
Alignment:
| Q |
97 |
tgtgaattttgaaataattatgaaccatactatctaaatatagtttaatgtttgtttatttccagttattgaattgatctttgtactcagtttt |
190 |
Q |
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| T |
8673596 |
tgtgaaatttgaaataattatgaaccatattatctaaatatagtttaatgttagtttatttccagttatcgaattgatccttgcactcagtttt |
8673689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 8637563 - 8637641
Alignment:
| Q |
89 |
tttacgtgtgtgaattttgaaataattatgaaccatactatctaaatatagtttaatgtttgtttatttccagttattga |
168 |
Q |
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| T |
8637563 |
tttatgtgtgtgaaatttgcaaaaattatgaaacatattatctaa-tatagtttaatgttagtttactttctgttattga |
8637641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 8673488 - 8673524
Alignment:
| Q |
17 |
aaaataagaaagaggtgttcaaggactgtttggataa |
53 |
Q |
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| T |
8673488 |
aaaataagaaagaggtgttcaagaaccgtttggataa |
8673524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 9337833 - 9337874
Alignment:
| Q |
96 |
gtgtgaattttgaaataattatgaaccatactatctaaatat |
137 |
Q |
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| T |
9337833 |
gtgtgaaatttgaaataattatgaatcatattatctaaatat |
9337874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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