View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_high_7 (Length: 485)
Name: NF3083_high_7
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 11389977 - 11390438
Alignment:
| Q |
16 |
gttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11389977 |
gttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgga |
11390076 |
T |
|
| Q |
116 |
gctccttgaagttttccgctacttctttctttgctggcttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11390077 |
gctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttct |
11390176 |
T |
|
| Q |
216 |
agttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
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| T |
11390177 |
agttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttccttctgtagtttctccacaaaggatgtt |
11390276 |
T |
|
| Q |
316 |
ttcactctcacctttttgaacagtgaaatcaagtgctcccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcctgtc |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11390277 |
ttcactttcacctttttgaacagtgaaatcaagtgctcccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcttgtc |
11390376 |
T |
|
| Q |
416 |
aatattactactatttatttcctaaattcactatattactactattgttattaccctatgct |
477 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
11390377 |
aatattactactatttatttcctaaatgcactatattactactattgttattaccctatgct |
11390438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 11406638 - 11407099
Alignment:
| Q |
16 |
gttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11406638 |
gttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgga |
11406737 |
T |
|
| Q |
116 |
gctccttgaagttttccgctacttctttctttgctggcttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11406738 |
gctccttgaagttttccgctacttctttctttgcctgcttaatttctacctgacaagtgtcttcccctacttcaataatgttgatatgctcttcttttct |
11406837 |
T |
|
| Q |
216 |
agttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
11406838 |
agttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattctggttccttctgtagtttctccacaaaggatgtt |
11406937 |
T |
|
| Q |
316 |
ttcactctcacctttttgaacagtgaaatcaagtgctcccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcctgtc |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11406938 |
ttcactttcacctttttgaacagtgaaatcaagtgctcccagttctgttcttcaatttcctcgttagttgccatcacttgaagagcttagatggcttgtc |
11407037 |
T |
|
| Q |
416 |
aatattactactatttatttcctaaattcactatattactactattgttattaccctatgct |
477 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11407038 |
aatattactactatttatttcctaaatgcactatattactactattgttattaccctatgct |
11407099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 24253530 - 24253157
Alignment:
| Q |
16 |
gttttcagcagttcttgcagaaaattgatgcaacacatactttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtgga |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||| ||||| ||| ||||||||||||||||| | |
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|
| T |
24253530 |
gttttcagcaattcttgcagaaaattgatgcagcacggactttgcttcgccatttcctcttttggcatatgaacttggtacttttcgaggatctggtgaa |
24253431 |
T |
|
| Q |
116 |
gctccttgaagttttccgctacttctttctttgctggcttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttct |
215 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||||| ||||| ||| | ||| || |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24253430 |
gctccttgaattcttcagctacttctttctttgcttgcttagtttgtgcctgacgagtgtcttcccctacttcaatagcgttgatatgctcttattttcc |
24253331 |
T |
|
| Q |
216 |
agttggttttgatttatgcagctcctaccgttttagatctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgtt |
315 |
Q |
| |
|
||||||||||| | ||| |||||| ||| || |||||| |||||| ||||| || |||||| ||||||| |||| |||| ||||||||||||||| |
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|
| T |
24253330 |
agttggttttggctcctgcggctcctgccgcttacgatctatttccttctgaaactcgaggtatcctggttccatctcctgtttatccacaaaggatgtt |
24253231 |
T |
|
| Q |
316 |
ttcactctcacctttttgaacagtgaaatcaagtgctcccagttctgttcttcaatttcctcgttagttgccat |
389 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||||||||||| | ||||||| || ||||||| || |||||||| |
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|
| T |
24253230 |
gtcaccttcaccttcttgaatagtgatatcaagtgctcccattcctgttctccagtttcctcttttgttgccat |
24253157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 54 - 395
Target Start/End: Complemental strand, 22567353 - 22567012
Alignment:
| Q |
54 |
actttgcttcgccatttcctctactagcatataaactttgtatttttcgaggatctggtggagctccttgaagttttccgctacttctttctttgctggc |
153 |
Q |
| |
|
|||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||| ||||||||||| | || ||| |||||||||||| | |
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|
| T |
22567353 |
actttgcttcatcatttcctttactgtgatatgaacttggtatttttcgaggatctggtgaagctccttgaactcgtcatctaattctttctttgcctac |
22567254 |
T |
|
| Q |
154 |
ttaatttctacctaacaagtgtcttcccctacttcaataatgttgatatgctcttcttttctagttggttttgatttatgcagctcctaccgttttagat |
253 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||||||||| | | || |||| |
|
|
| T |
22567253 |
ttaatttctgcctggcgagtgtcttcccctacttcaatagcattgatctgctcatcttttccagttggttttgatttctgcagctcctgctgcttgagat |
22567154 |
T |
|
| Q |
254 |
ctacttccttatgaaaatcaaggtattgtggttccttctctggtttctccacaaaggatgttttcactctcacctttttgaacagtgaaatcaagtgctc |
353 |
Q |
| |
|
|||||||||| ||||| || |||||| ||||||||||||| ||||||||||||| |||||| |||| ||||||| ||||| | ||| ||||||||||| |
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|
| T |
22567153 |
ctacttccttctgaaactcgaggtatcttggttccttctctagtttctccacaaatgatgttgtcaccgtcaccttcttgaataatgagatcaagtgctc |
22567054 |
T |
|
| Q |
354 |
ccagttctgttcttcaatttcctcgttagttgccatcacttg |
395 |
Q |
| |
|
||||| ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
22567053 |
tcagttttgttcctcagtttcctctttagttgccatcacttg |
22567012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 3398682 - 3398636
Alignment:
| Q |
343 |
atcaagtgctcccagttctgttcttcaatttcctcgttagttgccat |
389 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| |||||| |||| |
|
|
| T |
3398682 |
atcaagtgctcctagttctgttcttccatttcctctttagtttccat |
3398636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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