View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_1 (Length: 796)

Name: NF3083_low_1
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_1
NF3083_low_1
[»] chr1 (6 HSPs)
chr1 (18-785)||(51457903-51458674)
chr1 (600-718)||(30204068-30204186)
chr1 (602-718)||(51483059-51483175)
chr1 (602-718)||(51499896-51500012)
chr1 (414-529)||(51482835-51482950)
chr1 (472-529)||(51499733-51499790)
[»] chr5 (6 HSPs)
chr5 (352-788)||(43162513-43162947)
chr5 (38-297)||(43162247-43162497)
chr5 (598-718)||(27398527-27398647)
chr5 (602-718)||(20866760-20866876)
chr5 (414-529)||(20867027-20867142)
chr5 (473-529)||(27398420-27398476)
[»] scaffold0020 (2 HSPs)
scaffold0020 (602-718)||(135504-135620)
scaffold0020 (414-521)||(135782-135888)
[»] chr3 (1 HSPs)
chr3 (472-529)||(36549804-36549861)


Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 785
Target Start/End: Original strand, 51457903 - 51458674
Alignment:
Q  18 gttatgaatcgagtataggataaaaagtgcataatttgtaggacatgtgcatttttgttttgtaagccatttcatttatctgtttattttcttacgagct 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51457903 gttatgaatcgagtataggataaaaagtgcataatttgtgggacatgtgcatttttgttttggaagccatttcatttatctgtttattttcttacgagct 51458002  T
Q  118 gattgttgtgcagcttcaagtatatgtcataattctttgttcattgcactgtcatagataatttattcatttgatttgttatttctcttgggattttggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51458003 gattgttgtgcagcttcaagtatatgtcataattctttgttcattgcactgtcatagataatttatccatttgatttgttatttctcttgggattttggt 51458102  T
Q  218 aataatgactcaaaaaagtattctttttatgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgatcaattct 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458103 aataatgactcaaaaaagtattctttttatgacaagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgatcaattct 51458202  T
Q  318 ttgttagcactttataactattgatttttt-ctccaagtgaatattttattatgaggaaaattaaatgtttattannnnnnnn---gtaatttggctata 413  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  51458203 ttgttagcactttataactattgatttttttctccaagtgaatattttattatgaggaaaattaaatgtttattttttttttttttgtaatttggctata 51458302  T
Q  414 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458303 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 51458402  T
Q  514 ggagctacatgatgatggggaggcggttgatatgtttcaccaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgct 613  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458403 ggagctacatggtgatggggaggcggttgatatgtttcaccaactctctgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgct 51458502  T
Q  614 ctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagc 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458503 ctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagc 51458602  T
Q  714 aggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttactttctct 785  Q
    |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||    
T  51458603 aggtagaaccggcttagacaattttccattatctagctctatggatgcccctcatgaccatttaccttctct 51458674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 600 - 718
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
Q  600 ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg 699  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| ||||    
T  30204186 ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg 30204087  T
Q  700 cattcctttaaagcaggta 718  Q
    |  ||||||||||||||||    
T  30204086 ctctcctttaaagcaggta 30204068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 602 - 718
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
Q  602 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 701  Q
    ||||| |||||||| |||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||||| ||||||||| |||||| |||||     
T  51483059 ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct 51483158  T
Q  702 ttcctttaaagcaggta 718  Q
     ||||||||||||||||    
T  51483159 ctcctttaaagcaggta 51483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 602 - 718
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
Q  602 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 701  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | |     
T  51499896 ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct 51499995  T
Q  702 ttcctttaaagcaggta 718  Q
     ||||||||||||||||    
T  51499996 ctcctttaaagcaggta 51500012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 529
Target Start/End: Original strand, 51482835 - 51482950
Alignment:
Q  414 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 513  Q
    |||||||||||||||||||||| ||| ||||| || | ||| ||||||  |||  || |||| ||||| |||| |  ||||||||||||||||| |||||    
T  51482835 aggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaagag 51482934  T
Q  514 ggagctacatgatgat 529  Q
    ||||||||||| ||||    
T  51482935 ggagctacatggtgat 51482950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 51499733 - 51499790
Alignment:
Q  472 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 529  Q
    |||||||||||||||    ||||||||||||||||| |||||||||||||||| ||||    
T  51499733 cattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgat 51499790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 352 - 788
Target Start/End: Original strand, 43162513 - 43162947
Alignment:
Q  352 aagtgaatattttattatgaggaaaattaaatgtttattannnnnnnngtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaacta 451  Q
    ||||||||||||||||||||||||||||||||||||  |         |||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  43162513 aagtgaatattttattatgaggaaaattaaatgttt--tcttttttttgtaatttgactataaggtaaatgtgttgacgcatatcgctaaagtggaactg 43162610  T
Q  452 aaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttc 551  Q
    |||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||| ||  ||| |||| | |||| |||||| || ||||    
T  43162611 aaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagagggacctttatggtgatcgagaggtggttgaaatatttc 43162710  T
Q  552 accaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 651  Q
    | | || ||  ||||||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43162711 atcgacactccgacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 43162810  T
Q  652 gaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagtt 751  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| |    
T  43162811 gaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagct 43162910  T
Q  752 atagggatgcccctcatgaccatttactttctctgct 788  Q
     || ||||||||||| ||| |||||||||||||||||    
T  43162911 ctatggatgcccctcgtgatcatttactttctctgct 43162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 43162247 - 43162497
Alignment:
Q  38 taaaaagtgcataatttgtaggacatgtgcatttttgttttgtaagccatttcatttatctgtttattttcttacgagctgattgttgtgcagcttcaag 137  Q
    |||||||| ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||| || ||||||    
T  43162247 taaaaagtacataatttacaggacatgtgtgtttttgttttgtaagccattgcatttatctgttcattttcttaggagctgaatgttgtgtagtttcaag 43162346  T
Q  138 tatatgtcataattctttgttcattgcactgtcatagataatttattcatttgatttgttatttctcttgggattttggtaa-taatgactcaaaaaagt 236  Q
    || | ||||||||| ||||| |||||||||||||||||||||||  | ||||||||||          |||  ||||||||| |||||| || ||||||     
T  43162347 tacaagtcataattttttgtccattgcactgtcatagataatttcataatttgatttg----------tggtgttttggtaattaatgattcgaaaaaga 43162436  T
Q  237 attctttttatgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatga 297  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||| ||| ||||||| ||||||    
T  43162437 attctttttacgactagtgacataaacttcaaagtattcttacgacatgaataacgaatga 43162497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 598 - 718
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
Q  598 tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat 697  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||||||||||||||||| |||||| ||    
T  27398527 tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat 27398626  T
Q  698 tgcattcctttaaagcaggta 718  Q
    |||  ||||||| || |||||    
T  27398627 tgctctcctttagaggaggta 27398647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
Q  602 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 701  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||   |||||||||| ||| || ||||      
T  20866876 ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt 20866777  T
Q  702 ttcctttaaagcaggta 718  Q
     ||||||||||||||||    
T  20866776 ctcctttaaagcaggta 20866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 529
Target Start/End: Complemental strand, 20867142 - 20867027
Alignment:
Q  414 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 513  Q
    |||||||||||||||||||| | ||||||||||||||  || ||| |   |||| ||  ||||| ||||| ||    ||||||||||||||||| |||||    
T  20867142 aggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttgagcaagacaagag 20867043  T
Q  514 ggagctacatgatgat 529  Q
    ||||||||||| ||||    
T  20867042 ggagctacatggtgat 20867027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 27398420 - 27398476
Alignment:
Q  473 attaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 529  Q
    |||||||||||||  |  ||||||||||||||||| |||||||||||||||| ||||    
T  27398420 attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgat 27398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
Q  602 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 701  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||| || |||||     
T  135620 ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct 135521  T
Q  702 ttcctttaaagcaggta 718  Q
     ||||||||||||||||    
T  135520 ctcctttaaagcaggta 135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 414 - 521
Target Start/End: Complemental strand, 135888 - 135782
Alignment:
Q  414 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 513  Q
    |||||||||||||||||||||| ||||| ||||||||  || |||||   |||| ||  |||||||||||||| |  ||||||||||||||||| |||||    
T  135888 aggtaaatgtgttgactcatattgctaa-gtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag 135790  T
Q  514 ggagctac 521  Q
    ||||||||    
T  135789 ggagctac 135782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 36549804 - 36549861
Alignment:
Q  472 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 529  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| |||||||| ||||    
T  36549804 cattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgat 36549861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University