View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_12 (Length: 409)
Name: NF3083_low_12
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 47374390 - 47374769
Alignment:
| Q |
9 |
agcagagaaagagagaaactaagaaacggcggagagaaggtgatggttgttctccataaacaaaaccaaaccctagttttgttttacattgttgggtcat |
108 |
Q |
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| T |
47374390 |
agcaaagaaagagagaaactaagaaacggcggaaagaaggtgatggatgttctccataaacaaaatcaaaccctagttttgttttacattgttgggtcat |
47374489 |
T |
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| Q |
109 |
taatcatataagttggtttgaatatggttcaacccacaaacaattttatctaattaatcatataattattatatatatcagacgggttcggtttccgatg |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47374490 |
taatcatataagttagtttgaatatggttcaacccacaaacaattttatctaattaatcatataattattatatatatcagacgggttcggtttccgatg |
47374589 |
T |
|
| Q |
209 |
gactcagaccacccacttggaaccgaccgtgcctaaccaatatattatggttttatgcaacccgcttgactcgaagccctgaataaacataactgcttgc |
308 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47374590 |
gactcagaccacccacctggaacccaccgtgcctaaccaatatattatggttttatgcaacccgcttgacccgaagccctgaataaacataactgcttgc |
47374689 |
T |
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| Q |
309 |
tttcgagtgttctgctccggactgtttgggccagttacaatttttctccagccctagcagctgcagagattcaataaaaa |
388 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47374690 |
tttcgagtgttctgctccggacggtttgggccagttacaatttttccccagccctagcagctgcagagattcaataaaaa |
47374769 |
T |
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