View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_15 (Length: 362)
Name: NF3083_low_15
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 51626620 - 51626964
Alignment:
| Q |
18 |
atctgtattgtctctcttttacttgcagttttcattatgcattgaagatcttgtaccagtggctatcggaaagtatttaaaagctatgatttcaaccatg |
117 |
Q |
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| T |
51626620 |
atctgtattgtctctcttttacttgcagttttcattatgcattgaagatcttgtaccagtggctatcggaaagtatttaaaagctatgatttcaaccatg |
51626719 |
T |
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| Q |
118 |
cgccattctcagactactgcttctgttccagtgagtagttctgacaatgtgttggagagaatgtttgctttatttatggagcaaggaagcttatggccag |
217 |
Q |
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| T |
51626720 |
cgccattctcagactactggttctgttccagtgagtaattctgacaatgtgttggagagaatgtttgctttatttatggagcaaggaagcttatggccag |
51626819 |
T |
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| Q |
218 |
aaatatgcagcttgcctgaaattgagggccctggtatatcagagagtattctgtatgggtaatactatttaatttaaatttaaataaaataaacttttga |
317 |
Q |
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| T |
51626820 |
aaatatgcagcttgcctgaaattgagggccctgttatatcagagagtattctgtatgggtaatactatttaatttaaatttaaataaaataaacttttga |
51626919 |
T |
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| Q |
318 |
accaattatgagtccacaaacttttttagcttctctggttgaaat |
362 |
Q |
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| T |
51626920 |
accaattatgagtccacaaacttttttagcttctctggttgaaat |
51626964 |
T |
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