View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_16 (Length: 361)
Name: NF3083_low_16
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 772395 - 772737
Alignment:
| Q |
18 |
cttagcaacatagttgatttccgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgag |
117 |
Q |
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| T |
772395 |
cttagcaacatagttgatttccgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgag |
772494 |
T |
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| Q |
118 |
tgtgtttgactttgcttaaaatttgtttttattatatgtatcccttttctcgttttttatcctccgtaattcattgcgttttcgtgcaac--nnnnnnnn |
215 |
Q |
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| T |
772495 |
tgtttttgactttgcttaaaatttgtttttat--tatgtatcccttttctcgttttttttcctccgtaattcattgcgttttcgtgcaactttttttttt |
772592 |
T |
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| Q |
216 |
atactatccatcacatcactactcgttatcaaaacaaaacacggtgtgaatattttgttttggtctttgaagcttaatccacacctttcttgtgaaaaaa |
315 |
Q |
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| T |
772593 |
atactatccatcacatcactactcgttatcaaaacaaaacacggtgtgaata-tttgttttggtctttgaagcttaatccacacctttcgtgtgaaaaaa |
772691 |
T |
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| Q |
316 |
ggttgatttttgtctagtaatgatacttttgtgtctggttacacac |
361 |
Q |
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| T |
772692 |
ggttgatttttgtctagtaatgatacttttgtgtctggttacacac |
772737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 2455024 - 2454842
Alignment:
| Q |
22 |
gcaacatagttgatttccgtcctgtgttgcgatttacaagaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtg |
121 |
Q |
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| T |
2455024 |
gcaacgtagttgatttccgtcctgtgttgcgatttacaacaaatttcaccataacgttcttctcaaataaaatagaacaaatttgtatcggatgagtgtg |
2454925 |
T |
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| Q |
122 |
tttgactttgcttaaaatttgtttttattatatgtatcccttttctcgttttttatcctccgtaattcattgcgttttcgtgcaa |
206 |
Q |
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| T |
2454924 |
tttgactttgcttaaaattgttgtttat--tatgtatcccttttctcgttttttctcctccgtaattcattgcgttttcgtgcaa |
2454842 |
T |
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