View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_17 (Length: 352)
Name: NF3083_low_17
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 10981049 - 10980720
Alignment:
| Q |
10 |
aaaagaaccaaaattggtgtctgcttcaaaggtagctgttgttgctccagttgtgactccgaacactccaaactccttgggaaagagagcagctgagaat |
109 |
Q |
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| T |
10981049 |
aaaagaaccaaaattggtgtctgcttcaaaggtagatgcagttgctccagttgtgacttcgaacactccaaactccttgggaaagagagcagctgagaat |
10980950 |
T |
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| Q |
110 |
gtggttccagttgttgatgtcgctgaatttgatggatccacactaaaagagccaaaactggtccggtgtgaagatcgaagctgaggagtgaagtcttttg |
209 |
Q |
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| T |
10980949 |
gtggtttcagttgttgatgtcgctgaatttgatggatccacaccaaaagagccaaaactggttcggtgtgaagatcgaagctgaggagtgaagtcttttg |
10980850 |
T |
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| Q |
210 |
caaaattttcaactaccagtagtgttgctgatgtccaagtctcttgtcctttcattctgttttgttttggtttttaattgtcgcgttgaaatcttcggtt |
309 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10980849 |
caaaattttcaactaccagtagtgtttctgatgtccaagtctgttgtcctttcattctgttttgttttggtttttaattgtcgcgttgaaatcttcggtt |
10980750 |
T |
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| Q |
310 |
gcattttgttgccgtacttatttcgttttt |
339 |
Q |
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| T |
10980749 |
gcattttgttgccatacttatttcgttttt |
10980720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 22617629 - 22617554
Alignment:
| Q |
239 |
gatgtccaagtctcttgtcctttcattctgttttgttttggtttttaattgtcgcgttgaaatcttcggttgcatt |
314 |
Q |
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| T |
22617629 |
gatgtccaagtccgttgtcctttccttctgttttgttttggtttttaattgtcgcgttgaactcttctgttgcatt |
22617554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 22617709 - 22617663
Alignment:
| Q |
10 |
aaaagaaccaaaattggtgtctgcttcaaaggtagctgttgttgctc |
56 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
22617709 |
aaaagaaccaaaaatggtgtctgcttcaaaggtagctgcagttgctc |
22617663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 22617662 - 22617629
Alignment:
| Q |
98 |
gcagctgagaatgtggttccagttgttgatgtcg |
131 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
22617662 |
gcagctgagagtgtggttccagttgttgatgtcg |
22617629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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