View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_18 (Length: 346)
Name: NF3083_low_18
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 44533748 - 44533930
Alignment:
| Q |
1 |
atagtaagacatgtccttattttaatgaacttgaagctatttacaaagaaaagaacaaaacacagaacctttttggttctaattcgtttcatagcatgaa |
100 |
Q |
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| T |
44533748 |
atagtaagacatgtccttattttaatgaacttgaagctatttacaaagaaaagaacaaaacacagaacctttttggttctaattcgtttcatagcatgaa |
44533847 |
T |
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| Q |
101 |
gtcaaatgagacgatggagccattgatggtgcagccagaacaacaatggagacctccaactacatttgaagagggtgatgtgg |
183 |
Q |
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| T |
44533848 |
gtcaaatgagacgatggagccattgatggtgcagccagaacaacaatggagacctccaactacatttgaagagggtgatgtgg |
44533930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 328
Target Start/End: Original strand, 44534045 - 44534075
Alignment:
| Q |
298 |
gaggtgttagtagccgttatgaagttgtgac |
328 |
Q |
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| T |
44534045 |
gaggtgttagtagccgttatgaagttgtgac |
44534075 |
T |
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