View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_19 (Length: 328)
Name: NF3083_low_19
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 18575926 - 18576242
Alignment:
| Q |
1 |
atacaacattcacttgtattatataaaacacaattaaataatcaagcaatacatagaaaattagatccacgaataaaaacaaagacaaaacagacctata |
100 |
Q |
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| T |
18575926 |
atacaacattcacttgtattatataaaacacaattaaataatcaagcaatacatagaaaattagatccacgaataaaaacaaagacaaaacaaacctata |
18576025 |
T |
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| Q |
101 |
tttgaaaaaacaacctaaccttgtcttccacaatcgaaattcagaacccttgatgcaaaacagaaatattattttgtttaaaccactcaacacaaactac |
200 |
Q |
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| T |
18576026 |
tttgaaaaaacaacctaaccttgtcttccacaatcaaaattcagaacccttgatgcaaaacagaaatattattttgtttaaaccactcaacacaaactac |
18576125 |
T |
|
| Q |
201 |
tgcgaattgatatatgagtgtggtgtttattgtattttgttggaacatagaagtgtaacaaacaatatgtgcatgtctaacaaagtgatatctacaatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18576126 |
tgcgaattgatatatgagtgtggtgtttattgtattttgttggaacatagaagtgtaacaaacaatatgtgcatgtctaacaaagtgatatctacaatgg |
18576225 |
T |
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| Q |
301 |
cttgacaagtttttctt |
317 |
Q |
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||||||| ||||||||| |
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| T |
18576226 |
cttgacacgtttttctt |
18576242 |
T |
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