View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3083_low_20 (Length: 324)
Name: NF3083_low_20
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 2939181 - 2938868
Alignment:
| Q |
1 |
tggtgggtatgtatgggaaagttaggagaatggaagatgcatgtaaagggtttgatggaatggttgtgagaagtgtattgtcgtggaatacgttggtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2939181 |
tggtgggtatgtatgggaaagttaggagaatggaagatgcatgtaaagtgtttgatggaatggttgtcagaagtgtattgtcgtggaatacgttggtttc |
2939082 |
T |
|
| Q |
101 |
gggttatgcttttaattttgattatgttggcgcctttagggtttttaaacggatggagttggagggtttggagccgaattatgtgacgtggacttcgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939081 |
gggttatgcttttaattttgattatgttggcgcctttagggtttttaaacggatggagttggagggtttggagccgaattatgtgacgtggacttcgctt |
2938982 |
T |
|
| Q |
201 |
ttgtcaagtcatgctagatgtggactttttgatgaaactacggagttgtttaaggtgatgagaataaagggaattgagattagtggtgaagctgtggctg |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2938981 |
ttgtcgagtcatgctagatgtggactttttgatgaaactatggagttgtttaaggtgatgagaataaagggaattgagattagtggtgaagctgtagctg |
2938882 |
T |
|
| Q |
301 |
tcgtgttgtctgtg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2938881 |
tcgtgttgtctgtg |
2938868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7295010 - 7295039
Alignment:
| Q |
1 |
tggtgggtatgtatgggaaagttaggagaa |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7295010 |
tggtgggtatgtatgggaaagttaggagaa |
7295039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11741032 - 11741003
Alignment:
| Q |
1 |
tggtgggtatgtatgggaaagttaggagaa |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11741032 |
tggtgggtatgtatgggaaagttaggagaa |
11741003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University