View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_21 (Length: 321)
Name: NF3083_low_21
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 2939228 - 2939527
Alignment:
| Q |
7 |
atgacaatgaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttc |
106 |
Q |
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| T |
2939228 |
atgacaatgaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttc |
2939327 |
T |
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| Q |
107 |
atcatttgatgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2939328 |
atcatttgatgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatg |
2939427 |
T |
|
| Q |
207 |
gggtggttgtgaagatttttcgagctccggagagggaattgaagcgggagtaggttgcaatgaggcgggcggataagaaggaagaatggtgggtggttgt |
306 |
Q |
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| T |
2939428 |
gggtggttgtgaagatttttcgagcttcggagatggaattgaagcgggagtaggttgcaatgaggcgggcggataagaaggaagaatggtgggtggttgt |
2939527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 11741079 - 11741258
Alignment:
| Q |
7 |
atgacaatgaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttc |
106 |
Q |
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| T |
11741079 |
atgacaatgaacaattttacaatgaccaacacttccaattttcgaacaagacttaattatcaaaggtaatgtaaacccatcaggtaa------------- |
11741165 |
T |
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| Q |
107 |
atcatttgatgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatg |
206 |
Q |
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| T |
11741166 |
--------atgataaagattaacaacataattatagtacccatgtgatacattggctctaatgataggattccatacaagatttgaaagggattcaaatg |
11741257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 7294963 - 7294791
Alignment:
| Q |
7 |
atgacaatgaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttc |
106 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7294963 |
atgacaatgaacaattttacaatgaccaacacttccaattttcgaacaagacttaattatcaaaggtaatgtaaacccattaggtaa------------- |
7294877 |
T |
|
| Q |
107 |
atcatttgatgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagatt |
200 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |
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| T |
7294876 |
--------atgatatatattaacagcataattataatacccatgtgatacattggctctaatgatagaattacatacaagatttgaaagggatt |
7294791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 6589545 - 6589366
Alignment:
| Q |
7 |
atgacaatgaacaattttacaaagaccaacacttccaattttagaacaagacttaattatcaaaggtaatgtaaacccatcaggtaaaaatccaaacttc |
106 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
6589545 |
atgacaatgaacaattttacaatgaccaacacttccaattttcggacaagatttaattatcaaaggtaatataaacccatcaggtaaa------------ |
6589458 |
T |
|
| Q |
107 |
atcatttgatgataaattttaacagcataattataatacccatgtgatacatttgctctaatgatagaattccatacaagatttgaaagagattcaaatg |
206 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6589457 |
---------tgataaagattaacatcataattataatacccatgtgatacattggctctaatgatagaattccatacaagatttgaaagggattcaaatg |
6589367 |
T |
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