View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_22 (Length: 320)
Name: NF3083_low_22
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 24429540 - 24429234
Alignment:
| Q |
9 |
atgagatgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatgaagatttgattttgatta |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24429540 |
atgatatgaattatctgcatattgggtttgcaataatggggtgctaccatctgcatcacactctcttccactcatgatgatgaagatttgattttgatta |
24429441 |
T |
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| Q |
109 |
tctaattatcccaatcgcaaaaatttgttattgatttgaaaatagattttggtggatcggat-ttttgattgatctttcctttcagagagaatttggc-t |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
24429440 |
tctaattatcccaatcgcaaaaatttgttattgatttgaaaatagattttggtggatcggattttttgattgatctttcctttcagagagaatttggctt |
24429341 |
T |
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| Q |
207 |
tggtttgtgattgtgtgagatgagttttgttaaaatacaaatgcacaacacaatggcatgtggaaagtataagtcgcttaccccagcatacaaatgatat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24429340 |
tggtttgtgattgtgtgagatgagttttgttaaaatacaaatgcacaacacaatggcatgtggaaagtataagtcgcttacccgagcatacaaatgatat |
24429241 |
T |
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| Q |
307 |
atctgat |
313 |
Q |
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|| |||| |
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| T |
24429240 |
atgtgat |
24429234 |
T |
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