View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_23 (Length: 320)

Name: NF3083_low_23
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_23
NF3083_low_23
[»] chr5 (4 HSPs)
chr5 (12-314)||(9197865-9198167)
chr5 (34-160)||(26449066-26449190)
chr5 (46-137)||(32528994-32529083)
chr5 (99-154)||(3522516-3522571)
[»] chr8 (3 HSPs)
chr8 (13-175)||(33304045-33304205)
chr8 (229-290)||(32897512-32897574)
chr8 (34-154)||(32897613-32897731)
[»] chr1 (3 HSPs)
chr1 (34-154)||(42471282-42471404)
chr1 (98-153)||(44108879-44108934)
chr1 (46-137)||(5715034-5715123)
[»] chr7 (3 HSPs)
chr7 (12-152)||(41481771-41481907)
chr7 (98-160)||(42078130-42078192)
chr7 (98-160)||(37970443-37970505)
[»] chr2 (4 HSPs)
chr2 (12-158)||(40626995-40627139)
chr2 (56-160)||(19427141-19427243)
chr2 (11-65)||(1529365-1529419)
chr2 (98-156)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (98-160)||(11929-11991)
[»] chr4 (3 HSPs)
chr4 (98-160)||(14518556-14518618)
chr4 (11-77)||(26634567-26634632)
chr4 (98-159)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (46-155)||(40417621-40417727)
chr3 (98-153)||(20525556-20525611)
chr3 (51-126)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (66-141)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 9198167 - 9197865
Alignment:
Q  12 gatatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacat 111  Q
    |||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9198167 gatatgaaagagatatgataagattaaaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcatacgttcttggtgcacacat 9198068  T
Q  112 gataacaaagatgataatattattttatcatattatgtgtttgatgcacgtgttattaacatgaaggggnnnnnnnnnttaacaacgctggggcatattc 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||| ||||||||||||    
T  9198067 gataaaaaagatgataatattattttatcatattatgtgtttgatgcacgtgttattaacatgaaggaaaaaaagaaattaacaacgttggggcatattc 9197968  T
Q  212 atctccaccatttgcccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagctgatgaaacattgtcccc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9197967 atctccaccatttgcccccttcgtcattccatcaaccagattcattgtctttgaacaccgccatcgagcctccatcttcagccgatgaaacattgtcccc 9197868  T
Q  312 ttc 314  Q
    |||    
T  9197867 ttc 9197865  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 26449190 - 26449066
Alignment:
Q  34 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 133  Q
    ||||||||||| ||||| ||| |||||||||| || | |||||||||||||| | ||||  | |||||||||||| ||||||| ||||||||||  ||||    
T  26449190 attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcat--gcttttggtgcacatatgataagaaagatgatatcatta 26449093  T
Q  134 ttttatcatattatgtgtttgatgcac 160  Q
    ||||||| ||| ||||||||| |||||    
T  26449092 ttttatcctatcatgtgtttgttgcac 26449066  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 32528994 - 32529083
Alignment:
Q  46 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 137  Q
    |||||||||||||||||||  |||| |||||||||||||  | ||||  || ||||||||| | ||||||||||| |||||| |||||||||    
T  32528994 ataaagataggatatgatactgatatgatagacacttattctatcat--gtgtttggtgcatagatgataacaaatatgatagtattatttt 32529083  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 3522516 - 3522571
Alignment:
Q  99 ttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttg 154  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||    
T  3522516 ttggtgcacgcatgataaaaaagatgataacattattttatcctatcgtgtgtttg 3522571  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 33304045 - 33304205
Alignment:
Q  13 atatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatg 112  Q
    |||||| ||||||  ||||| ||||||||||| |||||||||| ||||||| | |||  |||||||| |||| || | ||  || |||| || |||||||    
T  33304045 atatgatagagactagataagattagaaaatggataaagatag-atatgatcgtgatg-gatagacatttattatattat--gtgtttgatgtacacatg 33304140  T
Q  113 ataacaaagatgataatattattttatcatattatgtgtttgatg--cacgtgttattaacatga 175  Q
    |||| ||||||||||||||| ||||||| |||||| | |||||||  ||| ||||||||||||||    
T  33304141 ataagaaagatgataatattgttttatcttattatatatttgatgcacacttgttattaacatga 33304205  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 32897574 - 32897512
Alignment:
Q  229 ccttcgtcattccatca-accagattcattgtctttgaacaccgccatcgagcctccatcttc 290  Q
    ||||| || |||||||| |||| ||||||||||||||| ||||| | ||||||||||||||||    
T  32897574 ccttcctcgttccatcataccaaattcattgtctttgagcaccgtcgtcgagcctccatcttc 32897512  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 32897731 - 32897613
Alignment:
Q  34 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 133  Q
    ||||||||||| || |||||| |||| ||||| || | |||||||| ||||| | ||||| |  ||||||||| | ||||||| ||||| ||||| |||     
T  32897731 attagaaaatggatcaagatatgataggatagtgacatgatagacatttatcctatcatacg--tttggtgcagatatgataagaaagaggataacattt 32897634  T
Q  134 ttttatcatattatgtgtttg 154  Q
    ||||||| ||| || ||||||    
T  32897633 ttttatcctatcatatgtttg 32897613  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 42471282 - 42471404
Alignment:
Q  34 attagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatatta 133  Q
    ||||||||||  ||||||||| |||||||||  |||| |||||||| ||||||| ||||  || ||||||||||||||||||| ||| ||||||  ||||    
T  42471282 attagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcat--gtgtttggtgcacacatgataagaaatatgatagcatta 42471379  T
Q  134 ttt----tatcatattatgtgtttg 154  Q
    |||    |||||||| |||||||||    
T  42471380 tttatcatatcatatcatgtgtttg 42471404  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 44108934 - 44108879
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 153  Q
    ||||| ||||||||||||| ||| ||||||  ||||||||||||||||||||||||    
T  44108934 tttggggcacacatgataataaacatgatagcattattttatcatattatgtgttt 44108879  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 5715034 - 5715123
Alignment:
Q  46 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattatttt 137  Q
    ||||||||  || ||||||| | ||||||||| | ||||||| ||||| ||||  ||||||| |||||||| ||| || |||||||||||||    
T  5715034 ataaagatgagacatgatagtggtaagatagatatttatcatatcatatgttt--ggtgcacgcatgataataaatattataatattatttt 5715123  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 41481771 - 41481907
Alignment:
Q  12 gatatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacat 111  Q
    ||||||| ||||||  ||||  ||||||||||| |||||||||||||| | ||| || | |||||||||||||| ||||||  |  ||||||  ||||||    
T  41481771 gatatgatagagacaggatatgattagaaaatgtataaagataggata-ggtagtgacatgatagacacttatcctgtcat--gcgtttggt--acacat 41481865  T
Q  112 gataacaaagatgataata-ttattttatcatattatgtgtt 152  Q
    ||||| ||||||||||| | |||||||||||||| |||||||    
T  41481866 gataaaaaagatgataacatttattttatcatatcatgtgtt 41481907  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 42078192 - 42078130
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 160  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||||||| || | ||||||||||    
T  42078192 tttggtgcacgcatgataagaaatatgataacattattttatcatatcatatttttgatgcac 42078130  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 37970505 - 37970443
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 160  Q
    |||||||||||| |||||| ||||||||||  ||||||||||| ||| ||| ||||| |||||    
T  37970505 tttggtgcacacttgataaaaaagatgatagcattattttatcctatcatgcgtttggtgcac 37970443  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 40627139 - 40626995
Alignment:
Q  12 gatatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacat 111  Q
    ||||||| |||||| | |||  |||||||  || |||| ||||  |||||||||  | |||||||||||||||||| ||||  || |||||| |||||||    
T  40627139 gatatgatagagacatcataggattagaagttggataaggatataatatgatagtaacaagatagacacttatcatttcat--gtgtttggtacacacat 40627042  T
Q  112 gataacaaagatgataatattattttatcatattatgtgtttgatgc 158  Q
    ||||| || || |||| | ||||||||| |||| |||||||||||||    
T  40627041 gataagaaggaggatattcttattttattatatcatgtgtttgatgc 40626995  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 19427243 - 19427141
Alignment:
Q  56 gatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttga 155  Q
    ||||| |||| |||||||||||||  |||| ||||||| |  ||||||||| | ||||||| ||| ||||||  ||||| |||||||||| ||||||||     
T  19427243 gatatcatagtgataagatagacatctatcgtgtcatacg--tttggtgcatatatgataataaatatgatagcattatgttatcatattttgtgtttgg 19427146  T
Q  156 tgcac 160  Q
    |||||    
T  19427145 tgcac 19427141  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 1529365 - 1529419
Alignment:
Q  11 tgatatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatag 65  Q
    |||||||| |||||  |||||| ||||||||||| ||||||||| ||||||||||    
T  1529365 tgatatgatagagatatgataagattagaaaatggataaagatatgatatgatag 1529419  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 29463280 - 29463222
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgat 156  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||||||| || ||||||||    
T  29463280 tttggtgtacatatgataagaaagatgatagcattattttatcatatcatatgtttgat 29463222  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 11991 - 11929
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 160  Q
    |||||||||| |||||||  ||| ||||||| ||||||||||||||| |||| ||||||||||    
T  11991 tttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttgatgcac 11929  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 14518618 - 14518556
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgcac 160  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  14518618 tttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttggtgcac 14518556  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 26634567 - 26634632
Alignment:
Q  11 tgatatgaaagagacgtgataaaattagaaaatgaataaagataggatatgatagggataagataga 77  Q
    |||||||| | |||| ||||| |||||||||||| ||||||||| |||||||||| |||||||||||    
T  26634567 tgatatgatacagacatgatagaattagaaaatggataaagata-gatatgatagtgataagataga 26634632  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 171929 - 171990
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgtttgatgca 159  Q
    |||| |||||||| ||||||||| || || ||||||||||||||||| |||| ||| |||||    
T  171929 tttgatgcacacaagataacaaatattatcatattattttatcatatcatgtattttatgca 171990  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 40417727 - 40417621
Alignment:
Q  46 ataaagataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatcatatt 145  Q
    |||| |||||||||||| || || | |||| ||| ||||||| ||||| ||||  ||||||| |||||||| ||| ||||||  |||||||||||||||     
T  40417727 ataaggataggatatgacagtgacatgata-acatttatcatatcatatgttt--ggtgcacgcatgataagaaatatgatagcattattttatcatatc 40417631  T
Q  146 atgtgtttga 155  Q
    ||||||||||    
T  40417630 atgtgtttga 40417621  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 20525611 - 20525556
Alignment:
Q  98 tttggtgcacacatgataacaaagatgataatattattttatcatattatgtgttt 153  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||| || |||||    
T  20525611 tttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 48935746 - 48935819
Alignment:
Q  51 gataggatatgatagggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgat 126  Q
    ||||||||| ||||| || | |||||||||||||| | ||||  || ||||||| ||||||||||| |||||||||    
T  48935746 gataggataggatagtgacatgatagacacttatcctatcat--gtgtttggtgtacacatgataagaaagatgat 48935819  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 31799395 - 31799468
Alignment:
Q  66 ggataagatagacacttatcatgtcataagtttttggtgcacacatgataacaaagatgataatattattttatca 141  Q
    ||||| |||||||||||||||| ||||| |||||   |||||| ||||||| ||| |||||| |||||||||||||    
T  31799395 ggataggatagacacttatcatatcatatgtttta--tgcacatatgataagaaatatgatagtattattttatca 31799468  T

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