View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_24 (Length: 316)

Name: NF3083_low_24
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_24
NF3083_low_24
[»] chr3 (12 HSPs)
chr3 (18-306)||(20026057-20026336)
chr3 (18-280)||(19964088-19964351)
chr3 (18-86)||(19957530-19957598)
chr3 (18-95)||(19833255-19833332)
chr3 (18-95)||(20035159-20035236)
chr3 (52-95)||(19850491-19850534)
chr3 (18-104)||(20019465-20019551)
chr3 (18-86)||(19839878-19839946)
chr3 (18-104)||(19968745-19968831)
chr3 (18-95)||(19813672-19813749)
chr3 (18-83)||(19819961-19820026)
chr3 (204-253)||(20035072-20035121)
[»] chr5 (2 HSPs)
chr5 (52-95)||(27473244-27473287)
chr5 (204-250)||(27473325-27473371)
[»] chr8 (1 HSPs)
chr8 (54-95)||(22655438-22655479)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 20026336 - 20026057
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgttagaggcaaaaccaaggtatagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20026336 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgttagaggcaaagccaaggtatagt 20026237  T
Q  118 tgtcctgaatctggatcctctactgctgcagtatgttggtgttgttgtactaagtacttggatcctgcaatacttttttggtggtattcatatttctaat 217  Q
    ||||||||| |||||||||||||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20026236 tgtcctgaacctggatcctctactactgcagtat---------gttgtactaagtacttggatcctgcaatacttttttggtggtattcatatttctaat 20026146  T
Q  218 tttgtgtaatagttagcaattatttgattgctaagacactgtgtatggtggcctgtgatagtactccnnnnnnncttatgcagcctatg 306  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||       |||||||||||||||    
T  20026145 tttgtgtaatagttagcaattatttgattgctaacacactgtgtaaggtggcctgtgatagtactcctttttttcttatgcagcctatg 20026057  T

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Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 19964088 - 19964351
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgttagaggcaaaaccaaggtatagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||    
T  19964088 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtttaaattgtttgaggcaaagccagggtatagt 19964187  T
Q  118 tgtcctgaatctggatcct-ctactgctgcagtatgttggtgttgttgtactaagtacttggatcctgcaatacttttttggtggtattcatatttctaa 216  Q
    ||||||||| | ||||| | | |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964188 tgtcctgaacccggatcattccactgctgcagtatggtgttgttgttgtactaagtacttggatcctgcaatacttttttggtggtattcatatttctaa 19964287  T
Q  217 ttttgtgtaatagttagcaattatttgattgctaagacactgtgtatggtggcctgtgatagta 280  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||    
T  19964288 ttttgtgtaatagttggcaattatttgattgcgaacacactgtgtatggtggcctgtgaaagta 19964351  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19957530 - 19957598
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt 86  Q
    |||||||| ||| |||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  19957530 gaaaacaggattgagaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaaaaggtt 19957598  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 19833255 - 19833332
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    |||||||||||| |||| |||||| ||| | || ||||||||||||||| ||||||||||||||||||| ||| ||||    
T  19833255 gaaaacagaattgagaagcttgaaagagtgttttctaagcttaaagaagaaagatttggccaaaaggttgaaaatgtt 19833332  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 20035236 - 20035159
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    |||||||||||  | || |||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  20035236 gaaaacagaatggaaaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatgtt 20035159  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 19850491 - 19850534
Alignment:
Q  52 ctaagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  19850491 ctaagcttaaagaagcaagatttggccaaaaggttgaaattgtt 19850534  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 20019551 - 20019465
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgttagaggcaaa 104  Q
    ||||||||||| ||||| |||||| |||||||||||||||| ||  ||||||||||||||   |||||| |||||||| ||| ||||    
T  20019551 gaaaacagaatccagaaacttgaaagagaggttgctaagctcaatcaagcaagatttggctctaaggttgaaattgttggagccaaa 20019465  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19839878 - 19839946
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt 86  Q
    |||||||| ||  |||| |||||| ||| |||| |||| ||||||||||||||||||||||||||||||    
T  19839878 gaaaacaggatcgagaagcttgaaagagtggtttctaaacttaaagaagcaagatttggccaaaaggtt 19839946  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 19968745 - 19968831
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgttagaggcaaa 104  Q
    |||||||| ||  |||| |||||| |||||||||||||||| ||| ||||||||||||||   |||||| |||||||| ||| ||||    
T  19968745 gaaaacaggatcaagaaacttgaaagagaggttgctaagctcaaacaagcaagatttggctctaaggttgaaattgttggagccaaa 19968831  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 19813672 - 19813749
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    |||||||| ||| |||| |||||| ||| | || ||||||| ||||||||||||||||||| ||||||| ||| ||||    
T  19813672 gaaaacaggattgagaaacttgaaagagtgttttctaagctcaaagaagcaagatttggccgaaaggttgaaaatgtt 19813749  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19819961 - 19820026
Alignment:
Q  18 gaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaag 83  Q
    |||||||| ||  |||| |||||| ||| |||| ||||||| ||||||||||||||||||||||||    
T  19819961 gaaaacaggatcgagaagcttgaaagagtggtttctaagctcaaagaagcaagatttggccaaaag 19820026  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 20035121 - 20035072
Alignment:
Q  204 ttcatatttctaattttgtgtaatagttagcaattatttgattgctaaga 253  Q
    |||||||| |||||| ||||||||||||  ||||||||||||||||||||    
T  20035121 ttcatattcctaattatgtgtaatagtttacaattatttgattgctaaga 20035072  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 27473244 - 27473287
Alignment:
Q  52 ctaagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  27473244 ctaagcttaaagaagcaagatttggccaaaaggttgaaactgtt 27473287  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 27473325 - 27473371
Alignment:
Q  204 ttcatatttctaattttgtgtaatagttagcaattatttgattgcta 250  Q
    ||||||||||||||||||||||||||||  |||| |||| |||||||    
T  27473325 ttcatatttctaattttgtgtaatagtttacaatgatttaattgcta 27473371  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22655479 - 22655438
Alignment:
Q  54 aagcttaaagaagcaagatttggccaaaaggttaaaattgtt 95  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  22655479 aagcttaaagaagcaagatttggccaaaaggttgaaaatgtt 22655438  T

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