View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_28 (Length: 290)

Name: NF3083_low_28
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_28
NF3083_low_28
[»] chr3 (2 HSPs)
chr3 (1-231)||(772768-772998)
chr3 (121-193)||(37032194-37032265)
[»] chr8 (5 HSPs)
chr8 (121-231)||(6388601-6388710)
chr8 (115-220)||(29918501-29918605)
chr8 (1-46)||(17469327-17469372)
chr8 (121-191)||(30903969-30904038)
chr8 (121-193)||(39379675-39379745)
[»] chr2 (5 HSPs)
chr2 (121-193)||(13531871-13531942)
chr2 (121-191)||(25210301-25210370)
chr2 (115-191)||(30696848-30696923)
chr2 (122-188)||(13954672-13954737)
chr2 (122-188)||(14095879-14095944)
[»] chr5 (2 HSPs)
chr5 (1-76)||(12447422-12447497)
chr5 (121-191)||(35584040-35584108)
[»] chr4 (9 HSPs)
chr4 (121-203)||(21714072-21714153)
chr4 (121-187)||(42907820-42907884)
chr4 (122-191)||(39086085-39086152)
chr4 (115-203)||(7334276-7334361)
chr4 (121-191)||(12075728-12075797)
chr4 (121-191)||(36919052-36919121)
chr4 (121-156)||(21956911-21956946)
chr4 (121-193)||(25265244-25265314)
chr4 (121-189)||(35304614-35304680)
[»] chr1 (5 HSPs)
chr1 (2-46)||(49740986-49741030)
chr1 (121-193)||(5283689-5283760)
chr1 (121-191)||(39219182-39219251)
chr1 (2-40)||(5181130-5181168)
chr1 (126-189)||(8880374-8880436)
[»] scaffold1322 (1 HSPs)
scaffold1322 (121-188)||(1037-1103)
[»] chr6 (5 HSPs)
chr6 (2-78)||(14506125-14506202)
chr6 (3-46)||(32959932-32959975)
chr6 (1-46)||(7393858-7393903)
chr6 (121-188)||(14321793-14321859)
chr6 (121-191)||(9402512-9402581)
[»] chr7 (1 HSPs)
chr7 (121-231)||(31345414-31345523)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 772768 - 772998
Alignment:
Q  1 ccaatttgacggattttcctcattttgactgggtttaggttttcccgattgtaaaacacaaatatgggataggtaacagagatatatctacccat----a 96  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||||||     |    
T  772768 ccaatttgacgaattttcctcattttgactgggtttaggttttc--gattgtaaaacacaaatatgggacaggtaacagggatatatctacccaccccga 772865  T
Q  97 atctatcccgaactcatg-cccaagtgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaattt 195  Q
    |   || || || | ||| ||||| | ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |    
T  772866 actcatgcccaaat-atgtcccaaatatagaaaatcaatttattacccttttgtataaataga--aactcaaaccttgaatcatttcactcacacaatct 772962  T
Q  196 aagtctcacacttctagatgacactcgcttgtcata 231  Q
    ||||||||||||||||||||||||||||||||||||    
T  772963 aagtctcacacttctagatgacactcgcttgtcata 772998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 37032194 - 37032265
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaat 193  Q
    |||||||||| |||||||||||| |||| |||||||| |  |||||||||| | |||||||||||||| |||||    
T  37032194 tgtagaaaattaatttattacccattttatataaataaa--aactcaaaccctaaatcatttcactcatacaat 37032265  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 6388601 - 6388710
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaatttaagtctcacacttctagatgacact 220  Q
    ||||||||||||||||||||||| ||| |||| | | |||||| |||||| | |||||||||||||||||||||  ||||||| ||||  | ||||||||    
T  6388601 tgtagaaaatcaatttattacccattt-tatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtctcagactttaaaatgacact 6388699  T
Q  221 cgcttgtcata 231  Q
    | ||| |||||    
T  6388700 cacttatcata 6388710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 29918605 - 29918501
Alignment:
Q  115 cccaagtgtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaatttaagtctcacacttctaga 213  Q
    ||||| |||| ||||||||||||||||| ||||| ||||||||||  |||||||||| | |||||||||||||||||| ||  |||||||  |||  |||    
T  29918605 cccaaatgtaaaaaatcaatttattacctcttttatataaataga--aactcaaaccctaaatcatttcactcacacagttagagtctcaatctttcaga 29918508  T
Q  214 tgacact 220  Q
    |||||||    
T  29918507 tgacact 29918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17469372 - 17469327
Alignment:
Q  1 ccaatttgacggattttcctcattttgactgggtttaggttttccc 46  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||    
T  17469372 ccaatttgacggattttccccgttttgactgggtttgggttttccc 17469327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 30904038 - 30903969
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    ||||||||||||||||||||| | |||| ||||||||||  |||  ||||||| ||||||||||||||||||    
T  30904038 tgtagaaaatcaatttattacacattttatataaataga--aaccaaaaccttaaatcatttcactcacaca 30903969  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 39379675 - 39379745
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaat 193  Q
    ||||| |||||||||||||| |||| |||||||||  |||||  |||| ||| |||||||||||| |||||||    
T  39379675 tgtagtaaatcaatttattatccttctgtataaat--agaaatccaaatcttaaatcatttcacttacacaat 39379745  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 13531942 - 13531871
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaat 193  Q
    |||||||||||||||||||| || |||| ||||||||||  |||||||||| | ||||||||||||||||||||    
T  13531942 tgtagaaaatcaatttattatccattttatataaataga--aactcaaaccctaaatcatttcactcacacaat 13531871  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 25210370 - 25210301
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    |||||||||||||||| |||||| |||| ||||||||||  |||||||||| | ||||||||||||||||||    
T  25210370 tgtagaaaatcaatttgttacccattttatataaataga--aactcaaaccctaaatcatttcactcacaca 25210301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 30696923 - 30696848
Alignment:
Q  115 cccaagtgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    ||||| |||| |||||||||||||||||| |||| |||||||  ||||| ||||||| | |||||| |||||||||||    
T  30696923 cccaaatgtaaaaaatcaatttattacccattttatataaat--agaaattcaaaccctaaatcatgtcactcacaca 30696848  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 13954737 - 13954672
Alignment:
Q  122 gtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcac 188  Q
    |||||||||||| |||||||| ||||| ||||||||||  ||||| |||| | |||||||||||||||    
T  13954737 gtagaaaatcaacttattaccacttttatataaataga--aactcgaaccctaaatcatttcactcac 13954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 14095944 - 14095879
Alignment:
Q  122 gtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcac 188  Q
    |||||||||||| |||||||| ||||| ||||||||||  ||||| |||| | |||||||||||||||    
T  14095944 gtagaaaatcaacttattaccacttttatataaataga--aactcgaaccctaaatcatttcactcac 14095879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12447497 - 12447422
Alignment:
Q  1 ccaatttgacggattttcctcattttgactgggtttaggttttcc-cgattgtaaaacacaaatatgggataggtaa 76  Q
    |||||||||||||||| || |||||||||||||||| ||||||||  ||||||||||||||  ||||||| ||||||    
T  12447497 ccaatttgacggatttccc-cattttgactgggtttgggttttccttgattgtaaaacacaggtatgggacaggtaa 12447422  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 35584108 - 35584040
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||| | ||||||||  ||||||||    
T  35584108 tgtacaaaatcaatttattacccttttatataaat--agaaactcaaaccctaaatcattttgctcacaca 35584040  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 21714072 - 21714153
Alignment:
Q  121 tgtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaatttaagtctca 203  Q
    |||||||||| ||||||||||| ||||| ||||||||||  |||||||||| | |||||||||||| ||||||||  |||||||    
T  21714072 tgtagaaaattaatttattacctcttttatataaataga--aactcaaaccctaaatcatttcacttacacaattagagtctca 21714153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 42907884 - 42907820
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactca 187  Q
    ||||||||||||||||| ||| ||||| |||||||  ||||||||||||| | ||||||||||||||    
T  42907884 tgtagaaaatcaatttactactcttttatataaat--agaaactcaaaccctaaatcatttcactca 42907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 39086152 - 39086085
Alignment:
Q  122 gtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    |||||||||||||||| |||| |||| |||||||  ||||||| ||||| | ||||||||||||||||||    
T  39086152 gtagaaaatcaatttactacctttttatataaat--agaaacttaaaccctaaatcatttcactcacaca 39086085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 7334276 - 7334361
Alignment:
Q  115 cccaagtgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaatttaagtctca 203  Q
    ||||| ||| |||||||||||||||| | |||| ||||||||||  |||||||||  | |||||||||||||||||| || ||||||||    
T  7334276 cccaaatgttgaaaatcaatttattatcgtttt-tataaataga--aactcaaactctaaatcatttcactcacacagttaaagtctca 7334361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 12075728 - 12075797
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    ||||||||||||||||||||||| |||| |||||||  ||||||| ||||  ||||||||||||| ||||||    
T  12075728 tgtagaaaatcaatttattacccattttatataaat--agaaactaaaactctgaatcatttcacccacaca 12075797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 36919121 - 36919052
Alignment:
Q  121 tgtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    |||||||||||| ||||||||| ||||| ||||||||||  |||||||||  | ||||||||||||||||||    
T  36919121 tgtagaaaatcagtttattaccacttttatataaataga--aactcaaactctaaatcatttcactcacaca 36919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 21956911 - 21956946
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaata 156  Q
    ||||||||||||||||||||||||||| ||||||||    
T  21956911 tgtagaaaatcaatttattacccttttatataaata 21956946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 25265244 - 25265314
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaat 193  Q
    |||||||||||||||||||| |||| | |||||||  |||||||||||   | |||||||| |||||||||||    
T  25265244 tgtagaaaatcaatttattatccttctatataaat--agaaactcaaattctaaatcattttactcacacaat 25265314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 35304614 - 35304680
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcaca 189  Q
    ||||| ||||||||||||||||||||| |||||  | ||||||||||||  | ||||||||||| ||||    
T  35304614 tgtaggaaatcaatttattacccttttatataa--aaagaaactcaaactctaaatcatttcacccaca 35304680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 49740986 - 49741030
Alignment:
Q  2 caatttgacggattttcctcattttgactgggtttaggttttccc 46  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  49740986 caatttgacggattttcccctttttgactgggtttaggttttccc 49741030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 5283689 - 5283760
Alignment:
Q  121 tgtagaaaatcaatttatta-cccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaat 193  Q
    |||||||||||||||||| | |||||||||||||||  || ||||||||| || ||||||||| ||||||||||    
T  5283689 tgtagaaaatcaatttatcatcccttttgtataaat--aggaactcaaactttaaatcatttctctcacacaat 5283760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 39219251 - 39219182
Alignment:
Q  121 tgtagaaaatcaatttattacc-cttttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    |||||||||| ||||||||||| ||||| ||||||||||  |||||||||| | ||||||||| ||||||||    
T  39219251 tgtagaaaattaatttattacctcttttatataaataga--aactcaaaccctaaatcatttcgctcacaca 39219182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 5181168 - 5181130
Alignment:
Q  2 caatttgacggattttcctcattttgactgggtttaggt 40  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  5181168 caatttgacgggttttccccattttgactgggtttaggt 5181130  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 8880436 - 8880374
Alignment:
Q  126 aaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcaca 189  Q
    ||||| |||||||||||| |||| ||||||||||  ||||||||| || ||||||||||||||||    
T  8880436 aaaataaatttattaccccttttttataaataga--aactcaaactttaaatcatttcactcaca 8880374  T

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Target: scaffold1322 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 1103 - 1037
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcac 188  Q
    |||||||||| |||||||||||| |||| ||||||||||  |||||||| ||| |||||||||||||||    
T  1103 tgtagaaaattaatttattacccattttatataaataga--aactcaaatcttaaatcatttcactcac 1037  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 14506202 - 14506125
Alignment:
Q  2 caatttgacggattttcctcattttgactgggtttaggtttt-cccgattgtaaaacacaaatatgggataggtaaca 78  Q
    ||||||||||| |||||| |||||||||||||||| |||||| |||||||  ||||||||  |||||||  |||||||    
T  14506202 caatttgacgggttttccccattttgactgggtttgggttttccccgatttcaaaacacaggtatgggacgggtaaca 14506125  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 32959975 - 32959932
Alignment:
Q  3 aatttgacggattttcctcattttgactgggtttaggttttccc 46  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||    
T  32959975 aatttgacggattttcctcgttttgattgggtttgggttttccc 32959932  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7393858 - 7393903
Alignment:
Q  1 ccaatttgacggattttcctcattttgactgggtttaggttttccc 46  Q
    ||||||||||||||||||| |||||||| ||||||| | |||||||    
T  7393858 ccaatttgacggattttccccattttgattgggtttggattttccc 7393903  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 14321859 - 14321793
Alignment:
Q  121 tgtagaaaatcaatttattaccc-ttttgtataaatagagaaactcaaaccttgaatcatttcactcac 188  Q
    |||||||||| |||||||||||  |||| ||||||||||  |||||||| ||| |||||||||||||||    
T  14321859 tgtagaaaattaatttattacctattttatataaataga--aactcaaatcttaaatcatttcactcac 14321793  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 9402581 - 9402512
Alignment:
Q  121 tgtagaaaatcaatttattaccct-tttgtataaatagagaaactcaaaccttgaatcatttcactcacaca 191  Q
    ||||||||||||||||| |||||  ||| ||||||||||  ||| |||||| | ||||||||||||||||||    
T  9402581 tgtagaaaatcaatttagtaccccatttatataaataga--aacccaaaccctaaatcatttcactcacaca 9402512  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 31345523 - 31345414
Alignment:
Q  121 tgtagaaaatcaatttattacccttttgtataaatagagaaactcaaaccttgaatcatttcactcacacaatttaagtctcacacttctagatgacact 220  Q
    |||| |||||||||||| |||| |||| |||| | | ||||||||||||  |  |||||||||||||||||||  ||||||||  | | |||||||||||    
T  31345523 tgtaaaaaatcaatttactaccatttt-tatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtcatttagatgacact 31345425  T
Q  221 cgcttgtcata 231  Q
    | ||| |||||    
T  31345424 cacttatcata 31345414  T

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