View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_29 (Length: 285)

Name: NF3083_low_29
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_29
NF3083_low_29
[»] chr5 (1 HSPs)
chr5 (18-285)||(32203521-32203788)
[»] chr2 (3 HSPs)
chr2 (18-285)||(40453859-40454126)
chr2 (124-240)||(40092254-40092370)
chr2 (18-66)||(40092428-40092476)
[»] chr8 (3 HSPs)
chr8 (18-269)||(39745314-39745565)
chr8 (124-240)||(12462611-12462727)
chr8 (18-66)||(12462785-12462833)
[»] chr1 (4 HSPs)
chr1 (18-269)||(27514137-27514388)
chr1 (18-269)||(9717572-9717823)
chr1 (124-243)||(8189791-8189910)
chr1 (18-66)||(8189685-8189733)
[»] chr4 (3 HSPs)
chr4 (18-269)||(56389894-56390145)
chr4 (209-271)||(3275773-3275835)
chr4 (209-271)||(28600917-28600979)
[»] chr7 (2 HSPs)
chr7 (124-240)||(4245814-4245930)
chr7 (18-66)||(4245988-4246036)
[»] chr3 (1 HSPs)
chr3 (18-66)||(8018414-8018462)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 32203788 - 32203521
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32203788 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 32203689  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32203688 ttttacccataacagttcacacattccaagtgccatacctctaaactctacttcagcacttgatctagctactactggctgcttcttactcctccaagtt 32203589  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgccca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32203588 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgccca 32203521  T

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Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 40453859 - 40454126
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40453859 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 40453958  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40453959 ttttacccataacagttcacacattccaagtgccatacctctaaactcttcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 40454058  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgccca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40454059 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgccca 40454126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 40092370 - 40092254
Alignment:
Q  124 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 223  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
T  40092370 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 40092271  T
Q  224 tttcctcctacaaaagt 240  Q
    |||||||| ||||||||    
T  40092270 tttcctcccacaaaagt 40092254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 40092476 - 40092428
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 66  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  40092476 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 40092428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 39745565 - 39745314
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
T  39745565 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 39745466  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
T  39745465 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 39745366  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcat 269  Q
    ||||| |||||||||||||| || || || || |||||||| ||||||||||    
T  39745365 acaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcat 39745314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 12462727 - 12462611
Alignment:
Q  124 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 223  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
T  12462727 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 12462628  T
Q  224 tttcctcctacaaaagt 240  Q
    |||||||| ||||||||    
T  12462627 tttcctcccacaaaagt 12462611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 12462833 - 12462785
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 66  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  12462833 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 12462785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 27514137 - 27514388
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||| ||||||| |||||  |||| || |||||||||||||||||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
T  27514137 catgttggacaagattatgagcaattgctattgctgatgtattatcacaatacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 27514236  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
T  27514237 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 27514336  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcat 269  Q
    ||||| |||||||||||||| || || || || |||||||| ||||||||||    
T  27514337 acaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcat 27514388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 9717572 - 9717823
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
T  9717572 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 9717671  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
T  9717672 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 9717771  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcat 269  Q
    ||||| ||||||||||||||  | || || || |||||||| ||||||||||    
T  9717772 acaagatttcctcctacaaacataaagtaaccagaggtagaccttctatcat 9717823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 8189791 - 8189910
Alignment:
Q  124 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 223  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
T  8189791 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 8189890  T
Q  224 tttcctcctacaaaagtgaa 243  Q
    |||||||| |||||||||||    
T  8189891 tttcctcccacaaaagtgaa 8189910  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8189685 - 8189733
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 66  Q
    ||||||||| ||| ||||| |||||||||||||||||| |||| |||||    
T  8189685 catgttggagagggttatgagcaatctctatggcagatttattgtcaca 8189733  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 56389894 - 56390145
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 117  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||| ||  |||||||| ||| |    
T  56389894 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaactcatatctgacaaaacatt 56389993  T
Q  118 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 217  Q
    |  |||||| || |||||||| |  ||||||| ||| ||||||||||||||||||||||| ||||| | ||| || || || || ||||||||||| |||    
T  56389994 tcgtacccacaaaagttcacataccccaagtgtcatgcctctaaactctgcttcagcactagatcttgttaccaccggttgttttttactcctccaggtt 56390093  T
Q  218 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcat 269  Q
    ||||| |||||||||||||| || || || || |||||||| ||||||||||    
T  56390094 acaagatttcctcctacaaatgtaaagtaaccagaggtagaccttctatcat 56390145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 3275773 - 3275835
Alignment:
Q  209 ctccaagttacaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatct 271  Q
    ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||    
T  3275773 ctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatct 3275835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 28600979 - 28600917
Alignment:
Q  209 ctccaagttacaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatct 271  Q
    ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||    
T  28600979 ctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatct 28600917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 4245930 - 4245814
Alignment:
Q  124 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 223  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
T  4245930 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 4245831  T
Q  224 tttcctcctacaaaagt 240  Q
    |||||||| ||||||||    
T  4245830 tttcctcccacaaaagt 4245814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 4246036 - 4245988
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 66  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  4246036 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 4245988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8018462 - 8018414
Alignment:
Q  18 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 66  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  8018462 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 8018414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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