View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_3 (Length: 596)

Name: NF3083_low_3
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_3
NF3083_low_3
[»] chr4 (5 HSPs)
chr4 (84-342)||(31178349-31178606)
chr4 (448-571)||(31178711-31178834)
chr4 (11-50)||(31178282-31178321)
chr4 (451-496)||(45511456-45511501)
chr4 (449-498)||(51734658-51734707)
[»] scaffold1625 (1 HSPs)
scaffold1625 (449-497)||(668-716)
[»] chr1 (3 HSPs)
chr1 (453-497)||(21432675-21432719)
chr1 (453-497)||(33466208-33466252)
chr1 (449-497)||(40809623-40809671)
[»] chr8 (3 HSPs)
chr8 (449-496)||(14127382-14127429)
chr8 (449-492)||(39199887-39199930)
chr8 (449-495)||(1775444-1775490)
[»] chr7 (3 HSPs)
chr7 (450-501)||(6427348-6427399)
chr7 (448-497)||(6892521-6892570)
chr7 (273-305)||(41750114-41750146)
[»] chr2 (1 HSPs)
chr2 (449-490)||(37468158-37468199)
[»] scaffold0295 (1 HSPs)
scaffold0295 (449-497)||(6030-6078)
[»] chr6 (1 HSPs)
chr6 (453-497)||(11113901-11113945)
[»] chr5 (2 HSPs)
chr5 (273-321)||(24468310-24468358)
chr5 (273-321)||(38426384-38426432)
[»] chr3 (3 HSPs)
chr3 (449-497)||(34102963-34103011)
chr3 (449-477)||(43898585-43898613)
chr3 (449-497)||(47187407-47187455)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 84 - 342
Target Start/End: Original strand, 31178349 - 31178606
Alignment:
Q  84 agtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtgatttatata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31178349 agtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtgatttatata 31178448  T
Q  184 tagtggtgaacaaggaatcttcaatagtggatcaaaatagtaattcaccaccacgattggaatagaaatgttttgtacacattcaggttagagaaatgat 283  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  31178449 tagttgtgaacaaggaatcttcaatagtggatcaaaatagtaa-tcaccaccacgattggaatagaaatgttttgtgcacattcagtttagagaaatgat 31178547  T
Q  284 atttaaacgaccatttttaaacgatttttgcgataactctttttgatatttgtattgta 342  Q
    |||||||| | |||||||||| |||||||| |||||||||||||||||||| |||||||    
T  31178548 atttaaacaatcatttttaaatgatttttgtgataactctttttgatatttttattgta 31178606  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 448 - 571
Target Start/End: Original strand, 31178711 - 31178834
Alignment:
Q  448 tgttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctcttcagagcaccatataaatatacagttttgatacgatatgaattttttaatc 547  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||||    
T  31178711 tgttgtcacaaaagttgtttaaaatcggttggacaaatatcattcctcttcagagcaccctataaatatacaattctggtacgatatgaattttttaatc 31178810  T
Q  548 attattttctcttatcttagatgg 571  Q
    ||||||||||||||||||||||||    
T  31178811 attattttctcttatcttagatgg 31178834  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 31178282 - 31178321
Alignment:
Q  11 cataggtataataaaattgtttggggaagtcattttctga 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31178282 cataggtataataaaattgtttggggaagtcattttctga 31178321  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 45511456 - 45511501
Alignment:
Q  451 tgtcacaaaagttgtttaaaattggtttgacaaatatcattcctct 496  Q
    ||||||||||||||||||||||||| |  |||||||||| ||||||    
T  45511456 tgtcacaaaagttgtttaaaattggatgtacaaatatcactcctct 45511501  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 51734658 - 51734707
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctcttc 498  Q
    ||||||||||||||||||||||| |||||   ||||||||||| ||||||    
T  51734658 gttgtcacaaaagttgtttaaaagtggttgttcaaatatcatttctcttc 51734707  T

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Target: scaffold1625 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 716 - 668
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||||||||    
T  716 gttgtcacaaaagttgtttagaattgcttgtacaaatatcattcctctt 668  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 21432675 - 21432719
Alignment:
Q  453 tcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  21432675 tcacaaaagttgtttaaaattggttgtataaatatcattcctctt 21432719  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 497
Target Start/End: Original strand, 33466208 - 33466252
Alignment:
Q  453 tcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    ||||||||||||||||||||| ||||  |||| ||||||||||||    
T  33466208 tcacaaaagttgtttaaaatttgttttgcaaacatcattcctctt 33466252  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 497
Target Start/End: Original strand, 40809623 - 40809671
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||| |||||||||  |||||||  ||||||||||||||||||    
T  40809623 gttgtcacaatagttgtttaggattggttgtacaaatatcattcctctt 40809671  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 14127382 - 14127429
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctct 496  Q
    ||||||||||||||||||||  |||||||  |||||||||||||||||    
T  14127382 gttgtcacaaaagttgtttaggattggttgtacaaatatcattcctct 14127429  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 492
Target Start/End: Complemental strand, 39199930 - 39199887
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattc 492  Q
    ||||||||||||||||||||| |||||||  |||||||||||||    
T  39199930 gttgtcacaaaagttgtttaagattggttgtacaaatatcattc 39199887  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 1775444 - 1775490
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctc 495  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||    
T  1775444 gttgtcacaaaagttgtttaagattggtggtacaaatatcattcctc 1775490  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 6427348 - 6427399
Alignment:
Q  450 ttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctcttcaga 501  Q
    |||||||||||||||| |||||||| ||  ||||||||||||||||| ||||    
T  6427348 ttgtcacaaaagttgtctaaaattgattgtacaaatatcattcctctacaga 6427399  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 6892570 - 6892521
Alignment:
Q  448 tgttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||||||||||| ||  |||||||  ||||||||||||||||||    
T  6892570 tgttgtcacaaaagttgtctatgattggttgtacaaatatcattcctctt 6892521  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 41750114 - 41750146
Alignment:
Q  273 agagaaatgatatttaaacgaccatttttaaac 305  Q
    ||||||||||||||||||| |||||||||||||    
T  41750114 agagaaatgatatttaaacaaccatttttaaac 41750146  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 37468199 - 37468158
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcat 490  Q
    ||||||||||||||||||| |||||||||  |||||||||||    
T  37468199 gttgtcacaaaagttgtttcaaattggttgtacaaatatcat 37468158  T

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Target: scaffold0295 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 6078 - 6030
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    ||||||||||| ||||||||||||||| |  |||||||||| |||||||    
T  6078 gttgtcacaaatgttgtttaaaattggatgtacaaatatcactcctctt 6030  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 497
Target Start/End: Complemental strand, 11113945 - 11113901
Alignment:
Q  453 tcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    ||||||||||||||||  |||||||  ||||||||||||||||||    
T  11113945 tcacaaaagttgtttaggattggttgtacaaatatcattcctctt 11113901  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 24468358 - 24468310
Alignment:
Q  273 agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact 321  Q
    ||||||||||||||| ||| ||||||||||||| | ||||| |||||||    
T  24468358 agagaaatgatatttgaacaaccatttttaaacaacttttgtgataact 24468310  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 38426432 - 38426384
Alignment:
Q  273 agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact 321  Q
    ||||||||||||||| ||| |  ||||||||||||||||||||| ||||    
T  38426432 agagaaatgatatttgaacaattatttttaaacgatttttgcgacaact 38426384  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 34103011 - 34102963
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||||| ||||||||||||| ||  | ||||||||||||||||    
T  34103011 gttgtcacaaaaattgtttaaaattgattatataaatatcattcctctt 34102963  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 477
Target Start/End: Complemental strand, 43898613 - 43898585
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtt 477  Q
    |||||||||||||||||||||||||||||    
T  43898613 gttgtcacaaaagttgtttaaaattggtt 43898585  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 47187455 - 47187407
Alignment:
Q  449 gttgtcacaaaagttgtttaaaattggtttgacaaatatcattcctctt 497  Q
    |||||||||||||||||||| ||||  ||  ||||||||||||||||||    
T  47187455 gttgtcacaaaagttgtttagaattaattgtacaaatatcattcctctt 47187407  T

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