View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_31 (Length: 277)

Name: NF3083_low_31
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_31
NF3083_low_31
[»] chr4 (18 HSPs)
chr4 (11-122)||(23079879-23079990)
chr4 (175-261)||(23079798-23079884)
chr4 (122-172)||(2503358-2503407)
chr4 (119-154)||(13334872-13334907)
chr4 (123-153)||(10717958-10717988)
chr4 (123-153)||(10931727-10931757)
chr4 (123-161)||(13910828-13910866)
chr4 (122-159)||(5498907-5498944)
chr4 (122-155)||(9885000-9885033)
chr4 (123-172)||(46094047-46094096)
chr4 (122-155)||(50594159-50594192)
chr4 (122-154)||(20514704-20514736)
chr4 (122-154)||(22452145-22452177)
chr4 (122-154)||(28292101-28292133)
chr4 (122-154)||(28292260-28292292)
chr4 (122-154)||(30966661-30966693)
chr4 (122-154)||(35370203-35370235)
chr4 (127-155)||(36405835-36405863)
[»] chr2 (18 HSPs)
chr2 (178-248)||(31146537-31146607)
chr2 (122-172)||(7572446-7572497)
chr2 (124-159)||(16361112-16361147)
chr2 (122-172)||(16667041-16667092)
chr2 (119-154)||(23834440-23834475)
chr2 (123-154)||(29640811-29640842)
chr2 (123-154)||(44611136-44611167)
chr2 (122-171)||(25228034-25228084)
chr2 (122-155)||(33941224-33941257)
chr2 (122-155)||(39341333-39341366)
chr2 (122-154)||(493935-493967)
chr2 (122-154)||(5558270-5558302)
chr2 (122-154)||(7327973-7328005)
chr2 (122-154)||(24413781-24413813)
chr2 (123-159)||(28761637-28761673)
chr2 (122-154)||(33441553-33441585)
chr2 (125-161)||(43015180-43015216)
chr2 (122-154)||(45632701-45632733)
[»] chr5 (9 HSPs)
chr5 (122-161)||(37872397-37872436)
chr5 (119-172)||(39418769-39418823)
chr5 (122-155)||(4221944-4221977)
chr5 (123-172)||(36992790-36992839)
chr5 (122-154)||(2545048-2545080)
chr5 (122-154)||(9227060-9227092)
chr5 (123-159)||(12496744-12496780)
chr5 (123-155)||(13012604-13012636)
chr5 (119-151)||(31601800-31601832)
[»] chr7 (11 HSPs)
chr7 (121-159)||(31533968-31534006)
chr7 (119-155)||(8603717-8603753)
chr7 (123-154)||(12670684-12670715)
chr7 (124-155)||(21852812-21852843)
chr7 (119-154)||(24205018-24205053)
chr7 (122-172)||(25417930-25417981)
chr7 (122-155)||(1492943-1492976)
chr7 (119-155)||(5835776-5835812)
chr7 (122-154)||(15108301-15108333)
chr7 (122-154)||(24205179-24205211)
chr7 (122-154)||(24374316-24374348)
[»] chr1 (17 HSPs)
chr1 (119-152)||(30434453-30434486)
chr1 (122-155)||(50879870-50879903)
chr1 (122-154)||(31923677-31923709)
chr1 (122-161)||(12277429-12277468)
chr1 (122-172)||(13787965-13788016)
chr1 (122-161)||(22604638-22604677)
chr1 (122-172)||(25806126-25806177)
chr1 (122-161)||(46583868-46583907)
chr1 (126-159)||(11452181-11452214)
chr1 (122-155)||(24004728-24004761)
chr1 (122-154)||(972978-973010)
chr1 (122-154)||(6607222-6607254)
chr1 (122-154)||(16555505-16555537)
chr1 (122-154)||(35384275-35384307)
chr1 (123-155)||(35384432-35384464)
chr1 (122-154)||(51809805-51809837)
chr1 (122-154)||(51809966-51809998)
[»] chr8 (8 HSPs)
chr8 (119-154)||(15152262-15152297)
chr8 (121-154)||(37611324-37611357)
chr8 (122-154)||(3912305-3912337)
chr8 (122-154)||(12330382-12330414)
chr8 (122-154)||(13759499-13759531)
chr8 (122-154)||(15152100-15152132)
chr8 (122-154)||(22686953-22686985)
chr8 (124-160)||(43382794-43382830)
[»] chr6 (11 HSPs)
chr6 (122-172)||(13431808-13431859)
chr6 (119-154)||(21226773-21226808)
chr6 (123-154)||(33352431-33352462)
chr6 (119-154)||(33352589-33352624)
chr6 (123-160)||(10790311-10790348)
chr6 (122-154)||(2181524-2181556)
chr6 (122-154)||(7017118-7017150)
chr6 (122-154)||(11336868-11336900)
chr6 (122-150)||(17157003-17157031)
chr6 (133-161)||(20591356-20591384)
chr6 (122-154)||(31733261-31733293)
[»] chr3 (12 HSPs)
chr3 (119-154)||(8355540-8355575)
chr3 (119-154)||(49166977-49167012)
chr3 (122-172)||(52351462-52351513)
chr3 (119-154)||(53523441-53523476)
chr3 (121-154)||(11414062-11414095)
chr3 (122-155)||(17543942-17543975)
chr3 (122-155)||(21549796-21549829)
chr3 (119-155)||(6510261-6510297)
chr3 (119-155)||(15289962-15289998)
chr3 (122-154)||(24286202-24286234)
chr3 (121-161)||(51688216-51688256)
chr3 (119-155)||(54012405-54012441)
[»] scaffold0034 (1 HSPs)
scaffold0034 (117-154)||(83479-83516)
[»] scaffold0221 (1 HSPs)
scaffold0221 (119-159)||(18358-18397)
[»] scaffold0111 (1 HSPs)
scaffold0111 (122-154)||(29660-29692)
[»] scaffold0025 (1 HSPs)
scaffold0025 (122-154)||(2964-2996)
[»] scaffold0007 (1 HSPs)
scaffold0007 (122-154)||(68873-68905)
[»] scaffold0001 (1 HSPs)
scaffold0001 (122-154)||(53337-53369)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 23079990 - 23079879
Alignment:
Q  11 cacagaaaactcgtccagtaataataagggtattcatccaaacaaaaatgaaaacaatgccctggacctaattgccgtaagattgccataataaggatat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23079990 cacagaaaactcgtccagtaataataagggtattcatccaaacaaaaatgaaaacaatgccctgaacctaattgccgtaagattgccataataaggatat 23079891  T
Q  111 tcatctaaacaa 122  Q
    ||||| ||||||    
T  23079890 tcatccaaacaa 23079879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 23079884 - 23079798
Alignment:
Q  175 aaacaaataccaaaaattgtcataaaagacacaggacacaaacagatgatccgtatcctcaatacacccacatcggccgatgcatag 261  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  23079884 aaacaaatacccaaaattgccataaaagacacaagacacaaacagatgatccatatcctcaatacacccacatcggccgatgtatag 23079798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 2503358 - 2503407
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  2503358 agggggtaaatcaaaaaatttattttacagggga-aaaacctattaaccct 2503407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 13334907 - 13334872
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13334907 acaagggggtaaatcaaaaaaaatattttacagggg 13334872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 10717988 - 10717958
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggg 153  Q
    |||||||||||||||||||||||||||||||    
T  10717988 gggggtaaatcaaaaaatatattttacaggg 10717958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 10931757 - 10931727
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggg 153  Q
    |||||||||||||||||||||||||||||||    
T  10931757 gggggtaaatcaaaaaatatattttacaggg 10931727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 13910828 - 13910866
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  13910828 gggggtaaatcaaaaaaaatattttacaggggagaaaac 13910866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 5498944 - 5498907
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  5498944 agggggtaaatcaaaaaaaatattttacagggggtaaa 5498907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 9885033 - 9885000
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  9885033 agggggtaaatcaaaaaaaatattttacagggga 9885000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 46094096 - 46094047
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaaacttattaaccct 172  Q
    |||||||||| |||||| ||||||||||||| | ||||| ||||||||||    
T  46094096 gggggtaaataaaaaaaaatattttacagggaaaaaaacctattaaccct 46094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 50594192 - 50594159
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  50594192 agggggtaaatcaaaaaaaatattttacagggga 50594159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 20514736 - 20514704
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  20514736 agggggtaaatcaaaaaaaatattttacagggg 20514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 22452145 - 22452177
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||||||||||||| ||||    
T  22452145 agggggtaaatcaaaaaatatattttactgggg 22452177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 28292133 - 28292101
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  28292133 agggggtaaatcaaaaaaaatattttacagggg 28292101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 28292260 - 28292292
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  28292260 agggggtaaatcaaaaaaaatattttacagggg 28292292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 30966693 - 30966661
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  30966693 agggggtaaatcaaaaaaaatattttacagggg 30966661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 35370235 - 35370203
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  35370235 agggggtaaatcaaaaaaaatattttacagggg 35370203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 36405835 - 36405863
Alignment:
Q  127 gtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||||||||||||||    
T  36405835 gtaaatcaaaaaatatattttacagggga 36405863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 31146607 - 31146537
Alignment:
Q  178 caaataccaaaaattgtcataaaagacacaggacacaaacagatgatccgtatcctcaatacacccacatc 248  Q
    ||||||||||| ||||  |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31146607 caaataccaaagattgctataaaagacacaagacacaaacagatgattcgtatcctcaatacacccacatc 31146537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 7572446 - 7572497
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  7572446 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 7572497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 16361112 - 16361147
Alignment:
Q  124 ggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16361112 ggggtaaatcaaaaaatatattttacagggggtaaa 16361147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 16667041 - 16667092
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg-ataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||||||| | ||||| ||||||||||    
T  16667041 agggggtaaatcaaaaaatttattttacaggggaaaaaaacctattaaccct 16667092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 23834440 - 23834475
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23834440 acaagggggtaaatcaaaaaaaatattttacagggg 23834475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 29640842 - 29640811
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||||||||||||||    
T  29640842 gggggtaaatcaaaaaatatattttacagggg 29640811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 44611136 - 44611167
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||||||||||||||    
T  44611136 gggggtaaatcaaaaaatatattttacagggg 44611167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 25228034 - 25228084
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaa-acttattaaccc 171  Q
    |||||||||||||||||| |||||||||||||| |||| || |||||||||    
T  25228034 agggggtaaatcaaaaaaaatattttacagggggtaaagacctattaaccc 25228084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 33941257 - 33941224
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  33941257 agggggtaaatcaaaaaaaatattttacagggga 33941224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 39341333 - 39341366
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  39341333 agggggtaaatcaaaaaaaatattttacagggga 39341366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 493935 - 493967
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  493935 agggggtaaatcaaaaaaaatattttacagggg 493967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 5558302 - 5558270
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  5558302 agggggtaaatcaaaaaaaatattttacagggg 5558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 7327973 - 7328005
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  7327973 agggggtaaatcaaaaaaaatattttacagggg 7328005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 24413781 - 24413813
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  24413781 agggggtaaatcaaaaaaaatattttacagggg 24413813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 28761673 - 28761637
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    |||||||||| |||||| |||||||||||||||||||    
T  28761673 gggggtaaataaaaaaaaatattttacaggggataaa 28761637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 33441585 - 33441553
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  33441585 agggggtaaatcaaaaaaaatattttacagggg 33441553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 43015180 - 43015216
Alignment:
Q  125 gggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  43015180 gggtaaatcaaaaaaaatattttacaggggacaaaac 43015216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 45632701 - 45632733
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  45632701 agggggtaaatcaaaaaaaatattttacagggg 45632733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 37872436 - 37872397
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  37872436 agggggtaaatcaaaaaaaatattttacaggggataaaac 37872397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 39418823 - 39418769
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacaggggataaa-acttattaaccct 172  Q
    ||||||||| ||||||||||| |||||||||||||| |||| || ||||||||||    
T  39418823 acaagggggcaaatcaaaaaaaatattttacagggggtaaagacctattaaccct 39418769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 4221944 - 4221977
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  4221944 agggggtaaatcaaaaaaaatattttacagggga 4221977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 36992839 - 36992790
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaaacttattaaccct 172  Q
    |||||||||| |||||| ||||||||||||| | ||||| ||||||||||    
T  36992839 gggggtaaataaaaaaaaatattttacagggaaaaaaacctattaaccct 36992790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 2545080 - 2545048
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  2545080 agggggtaaatcaaaaaaaatattttacagggg 2545048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 9227060 - 9227092
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  9227060 agggggtaaatcaaaaaaaatattttacagggg 9227092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 12496744 - 12496780
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  12496744 gggggtaaatcaaaaaaaatattttacagggggtaaa 12496780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 13012604 - 13012636
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||| |||||||||||||||    
T  13012604 gggggtaaatcaaaaaaaatattttacagggga 13012636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 31601832 - 31601800
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacag 151  Q
    ||||||||||||||||||||| |||||||||||    
T  31601832 acaagggggtaaatcaaaaaaaatattttacag 31601800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 31534006 - 31533968
Alignment:
Q  121 aagggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  31534006 aagggggtaaatcaaaaaatatattttacagggaataaa 31533968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 8603717 - 8603753
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8603717 acaagggggtaaatcaaaaaaaatattttacagggga 8603753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 12670715 - 12670684
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||||||||||||||    
T  12670715 gggggtaaatcaaaaaatatattttacagggg 12670684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 155
Target Start/End: Complemental strand, 21852843 - 21852812
Alignment:
Q  124 ggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||||||||||||||||||    
T  21852843 ggggtaaatcaaaaaatatattttacagggga 21852812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 24205053 - 24205018
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24205053 acaagggggtaaatcaaaaaaaatattttacagggg 24205018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25417930 - 25417981
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  25417930 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 25417981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 1492943 - 1492976
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  1492943 agggggtaaatcaaaaaaaatattttacagggga 1492976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 5835812 - 5835776
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||| |||||| |||||||||||||||    
T  5835812 acaagggggtaaataaaaaaaaatattttacagggga 5835776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 15108301 - 15108333
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  15108301 agggggtaaatcaaaaaaaatattttacagggg 15108333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 24205179 - 24205211
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  24205179 agggggtaaatcaaaaaaaatattttacagggg 24205211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 24374348 - 24374316
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  24374348 agggggtaaatcaaaaaaaatattttacagggg 24374316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 30434453 - 30434486
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagg 152  Q
    ||||||||||||||||||||||||||||||||||    
T  30434453 acaagggggtaaatcaaaaaatatattttacagg 30434486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 50879903 - 50879870
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||||||||||||||||||||    
T  50879903 agggggtaaatcaaaaaatatattttacagggga 50879870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 31923709 - 31923677
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||||||||||||||||||    
T  31923709 agggggtaaatcaaaaaatatattttacagggg 31923677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 12277429 - 12277468
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  12277429 agggggtaaatcaaaaaaaatattttacaggggagaaaac 12277468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 13788016 - 13787965
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  13788016 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 13787965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 22604638 - 22604677
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  22604638 agggggtaaatcaaaaaaaatattttacaggggaaaaaac 22604677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25806126 - 25806177
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  25806126 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 25806177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 46583907 - 46583868
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  46583907 agggggtaaatcaaaaaaaatattttacaggggaaaaaac 46583868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 11452214 - 11452181
Alignment:
Q  126 ggtaaatcaaaaaatatattttacaggggataaa 159  Q
    |||||||||||||| |||||||||||||||||||    
T  11452214 ggtaaatcaaaaaaaatattttacaggggataaa 11452181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 24004728 - 24004761
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  24004728 agggggtaaatcaaaaaaaatattttacagggga 24004761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 972978 - 973010
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  972978 agggggtaaatcaaaaaaaatattttacagggg 973010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 6607254 - 6607222
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  6607254 agggggtaaatcaaaaaaaatattttacagggg 6607222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 16555505 - 16555537
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  16555505 agggggtaaatcaaaaaaaatattttacagggg 16555537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 35384307 - 35384275
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  35384307 agggggtaaatcaaaaaaaatattttacagggg 35384275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 35384432 - 35384464
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||| |||||||||||||||    
T  35384432 gggggtaaatcaaaaaaaatattttacagggga 35384464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 51809837 - 51809805
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  51809837 agggggtaaatcaaaaaaaatattttacagggg 51809805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 51809966 - 51809998
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  51809966 agggggtaaatcaaaaaaaatattttacagggg 51809998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 15152262 - 15152297
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  15152262 acaagggggtaaatcaaaaaaaatattttacagggg 15152297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 37611357 - 37611324
Alignment:
Q  121 aagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||| ||||||||||||||    
T  37611357 aagggggtaaatcaaaaaaaatattttacagggg 37611324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 3912337 - 3912305
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  3912337 agggggtaaatcaaaaaaaatattttacagggg 3912305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 12330414 - 12330382
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  12330414 agggggtaaatcaaaaaaaatattttacagggg 12330382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 13759499 - 13759531
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  13759499 agggggtaaatcaaaaaaaatattttacagggg 13759531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 15152132 - 15152100
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||| |||||||||||||||||||||    
T  15152132 agggggtaaataaaaaaatatattttacagggg 15152100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 22686953 - 22686985
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  22686953 agggggtaaatcaaaaaaaatattttacagggg 22686985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 43382830 - 43382794
Alignment:
Q  124 ggggtaaatcaaaaaatatattttacaggggataaaa 160  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  43382830 ggggtaaatcaaaaaaaatattttacaggggagaaaa 43382794  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 13431808 - 13431859
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  13431808 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 13431859  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 21226808 - 21226773
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21226808 acaagggggtaaatcaaaaaaaatattttacagggg 21226773  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 33352462 - 33352431
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||||||||||||||    
T  33352462 gggggtaaatcaaaaaatatattttacagggg 33352431  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 33352589 - 33352624
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33352589 acaagggggtaaatcaaaaaaaatattttacagggg 33352624  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 10790311 - 10790348
Alignment:
Q  123 gggggtaaatcaaaaaatatattttacaggggataaaa 160  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  10790311 gggggtaaatcaaaaaaaatattttacaggggagaaaa 10790348  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 2181524 - 2181556
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  2181524 agggggtaaatcaaaaaaaatattttacagggg 2181556  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 7017150 - 7017118
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  7017150 agggggtaaatcaaaaaaaatattttacagggg 7017118  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 11336868 - 11336900
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  11336868 agggggtaaatcaaaaaaaatattttacagggg 11336900  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 17157003 - 17157031
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca 150  Q
    |||||||||||||||||||||||||||||    
T  17157003 agggggtaaatcaaaaaatatattttaca 17157031  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 20591356 - 20591384
Alignment:
Q  133 caaaaaatatattttacaggggataaaac 161  Q
    |||||||||||||||||||||||||||||    
T  20591356 caaaaaatatattttacaggggataaaac 20591384  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 31733261 - 31733293
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  31733261 agggggtaaatcaaaaaaaatattttacagggg 31733293  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 8355540 - 8355575
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8355540 acaagggggtaaatcaaaaaaaatattttacagggg 8355575  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 49166977 - 49167012
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  49166977 acaagggggtaaatcaaaaaaaatattttacagggg 49167012  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 52351513 - 52351462
Alignment:
Q  122 agggggtaaatcaaaaaatatattttaca-ggggataaaacttattaaccct 172  Q
    ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||    
T  52351513 agggggtaaatcaaaaaatttattttacagggggaaaaaacctattaaccct 52351462  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 53523476 - 53523441
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||||| ||||||||||||||    
T  53523476 acaagggggtaaatcaaaaaaaatattttacagggg 53523441  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 11414062 - 11414095
Alignment:
Q  121 aagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||||||||||||||||| ||||||||||||||    
T  11414062 aagggggtaaatcaaaaaacatattttacagggg 11414095  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 17543942 - 17543975
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  17543942 agggggtaaatcaaaaaaaatattttacagggga 17543975  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 21549829 - 21549796
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||||||| |||||||||||||||    
T  21549829 agggggtaaatcaaaaaaaatattttacagggga 21549796  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 6510297 - 6510261
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||| |||||||||||||| |||||||||||||||    
T  6510297 acaaggaggtaaatcaaaaaaaatattttacagggga 6510261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 15289962 - 15289998
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggga 155  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  15289962 acaagggggtaaatcaaaaaaaatattttacacggga 15289998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 24286234 - 24286202
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  24286234 agggggtaaatcaaaaaaaatattttacagggg 24286202  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 51688216 - 51688256
Alignment:
Q  121 aagggggtaaatcaaaaaatatattttacaggggataaaac 161  Q
    |||||| |||||||||||| |||||||||||||| ||||||    
T  51688216 aaggggataaatcaaaaaaaatattttacagggggtaaaac 51688256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 54012441 - 54012405
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacagggga 155  Q
    |||||||||||||| |||||| |||||||||||||||    
T  54012441 acaagggggtaaattaaaaaaaatattttacagggga 54012405  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 83516 - 83479
Alignment:
Q  117 aaacaagggggtaaatcaaaaaatatattttacagggg 154  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  83516 aaacaggggggtaaatcaaaaaaaatattttacagggg 83479  T

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Target: scaffold0221 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 18397 - 18358
Alignment:
Q  119 acaagggggtaaatcaaaaaatatattttacaggggataaa 159  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  18397 acaagggggtaaatcaaaaaatat-ttttacagaggataaa 18358  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 29660 - 29692
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  29660 agggggtaaatcaaaaaaaatattttacagggg 29692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 2964 - 2996
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  2964 agggggtaaatcaaaaaaaatattttacagggg 2996  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 68873 - 68905
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  68873 agggggtaaatcaaaaaaaatattttacagggg 68905  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 53369 - 53337
Alignment:
Q  122 agggggtaaatcaaaaaatatattttacagggg 154  Q
    |||||||||||||||||| ||||||||||||||    
T  53369 agggggtaaatcaaaaaaaatattttacagggg 53337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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