View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_33 (Length: 275)
Name: NF3083_low_33
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 38758598 - 38758791
Alignment:
| Q |
6 |
aaaatgtactctagcttgtattcattgcaccaaagttaattatcattcactcatctagcattcattaatgaagtgatttaattaatgtcccaacactctg |
105 |
Q |
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| T |
38758598 |
aaaatgtactctagcttgtattcattgcaccaaagttaattatcattcactcatctagcattcattaatgaagtgatttaattaatgtccc-acactctg |
38758696 |
T |
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| Q |
106 |
cttctacgtgcacaattttgtctgtatcggctggctaaagacaaaataatgaagagtgttttttgggagaaaaaataatgaagagttaaatatat |
200 |
Q |
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| T |
38758697 |
cttctgcgtgcacaattttgtctgtatcggctggcaaaagacagaataatgaagagtgttttttgagagaaaaaataatgaagagttaaatatat |
38758791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 38758785 - 38758840
Alignment:
| Q |
213 |
aatatatcaatttttggtcaccctaaattttttattacaaattttagcctttgctt |
268 |
Q |
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| T |
38758785 |
aatatatcaatttttggtctctctaaattttttattacaaattttagcctttgctt |
38758840 |
T |
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