View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_36 (Length: 266)
Name: NF3083_low_36
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 34670661 - 34670413
Alignment:
| Q |
16 |
catccaagctatctattggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670661 |
catccaagctatctatcggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
34670562 |
T |
|
| Q |
116 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgatggaatatcgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34670561 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgattgaatatcgat |
34670462 |
T |
|
| Q |
216 |
aataaataattatatagaattacaatttaattttcatatctgtgctgct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
34670461 |
aataaataattatatagaattacaatttaattttcatatgtgtgatgct |
34670413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 34632330 - 34632092
Alignment:
| Q |
16 |
catccaagctatctattggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
34632330 |
catccaagctatctattggatctccacacccagatccgattgtggagacatcttccttgtctgcagtgcagccacccgagcctacttatgatccaaagat |
34632231 |
T |
|
| Q |
116 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgatggaatatcgat |
215 |
Q |
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| T |
34632230 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagatcgagacattggtttatgcttgtcaggtttctctcaccacatgattgaatatcgat |
34632131 |
T |
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| Q |
216 |
aataaataattatatagaattacaatttaattttcatat |
254 |
Q |
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| |||||||||||| | ||||||||||||| |||||||| |
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| T |
34632130 |
agtaaataattataaataattacaatttaactttcatat |
34632092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 26964459 - 26964211
Alignment:
| Q |
16 |
catccaagctatctattggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26964459 |
catccaagctatctatcggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
26964360 |
T |
|
| Q |
116 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgatggaatatcgat |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26964359 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgattgaatatcgat |
26964260 |
T |
|
| Q |
216 |
aataaataattatatagaattacaatttaattttcatatctgtgctgct |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
26964259 |
aataaataattatatagaattacaatttaattttcatatgtgtgatgct |
26964211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 26856292 - 26856054
Alignment:
| Q |
16 |
catccaagctatctattggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgat |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
26856292 |
catccaagctatctattggatctccacacccagatccgattgtagagacatcttccttgtctgcagtgcagccacccgagcctacttatgatccaaagat |
26856193 |
T |
|
| Q |
116 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttctctcaccacatgatggaatatcgat |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26856192 |
taagaatgatttggaacgttcaaaggctttgtcatgcttgcagatcgagacattggtttatgcttgtcaggtttctctcaccacatgattgaatatcgat |
26856093 |
T |
|
| Q |
216 |
aataaataattatatagaattacaatttaattttcatat |
254 |
Q |
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| |||||||||||| | ||||||||||||| |||||||| |
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| T |
26856092 |
agtaaataattataaataattacaatttaactttcatat |
26856054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 18472095 - 18471929
Alignment:
| Q |
25 |
tatctattggacctccacacccagatccaattgtagagacatcttctttgtctgcagtgcagccacccgagcctacttatgacccaatgattaagaatga |
124 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||| ||||| || ||||| ||||| |||| | ||| || | |
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| T |
18472095 |
tatctattggacctccacacccagaccctgttgtggagacatcttccttgtctgcagtgcaaccaccggatcctacctatgatccaaaaactaaagataa |
18471996 |
T |
|
| Q |
125 |
tttggaacgttcaaaggctttgtcatgcttgcagattgagacattggtctatgcttgtcaggtttct |
191 |
Q |
| |
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| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
18471995 |
tctggaaagttcaaaggctttgtcatgcttgcaaattgagaccttggtctatgcttgtcaggtttct |
18471929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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