View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_38 (Length: 264)
Name: NF3083_low_38
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 21838871 - 21838612
Alignment:
| Q |
1 |
tacatgtggtcagtaggtataagtgcatttgagcagactctaagagcaataatgcagggtaaaccggggtttcacttgtaagaaaaatcatgttgctaca |
100 |
Q |
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| T |
21838871 |
tacatgtggtcagtaggtataagtgcatttgagcagactctaagaacaataatgcagggtaaaccggggtttcacttgtaagaaaaatcatgctgttaca |
21838772 |
T |
|
| Q |
101 |
cgatttcgactgttaatttgaaattgaacggttaaaatcaaatatgcataaactcggttttgtattttctttggcagctagagttctgatgaaaaatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21838771 |
cgatttcgactgttaatttgaaattgaacggttaaaatcaaatatgcataaactcggttttgtatttcctttggcagctagagttctgataaaaaatatg |
21838672 |
T |
|
| Q |
201 |
gaaatttttacaatcctatctctcaacatttcctagatattacatatgttcatctcactc |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21838671 |
gaaatttttacaatcctatctctcaacatttcctagatattacatatgttcatatcactc |
21838612 |
T |
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