View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_4 (Length: 532)
Name: NF3083_low_4
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 55452661 - 55453165
Alignment:
| Q |
18 |
catctttgatgcttgcacaatatagggaagaaaaaagaaagataataagactataagagtgagagnnnnnnntggaaagggagatgtataaatataataa |
117 |
Q |
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| T |
55452661 |
catctttgatgcttgcacaatatagggaagaaaaaagaaagataataagactataagagtgagagaaaaaaaaggaaagggagatgtataaatataa--- |
55452757 |
T |
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| Q |
118 |
agttgtaattcattttattttgttttccaatgatggaattgtttcattacagaataatcaaacaatagggtgaaaacttaatttttatttgttttgctcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55452758 |
agttgtaattcattttattttgttttccaatgatggaattgtttcattacagaataatcaaacaatagggtgaaaacttaatttttatttgtttttctcc |
55452857 |
T |
|
| Q |
218 |
attctattacatttgcacaagatatccaaacctagtcttagggactaaaatgacgatttacagtgcattcggtattcaatagtcattgtgttgaaactgg |
317 |
Q |
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| T |
55452858 |
attctattacatttgcacaagatatccaaacatagtcttagggactaaaatgacgatttacagtgcattcggtattcaatagtcattgtgttgaaactgg |
55452957 |
T |
|
| Q |
318 |
cacaactgacaaagttattcttactatgtggttcatacttcctgccaaaacaatttcaccaaagctaaaatcttcacttggttgagtgacattgatttgt |
417 |
Q |
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| T |
55452958 |
cacaactgacaaagttattcttactatgtggttcatacttcctgccaaaacaatttcaccaaagctaaaatcttcacttggttgagtgacattgatttgt |
55453057 |
T |
|
| Q |
418 |
atttccagatcctgagttccttgtggagttatggtnnnnnnngttggatacaggttcactgcagttctattaggagctcgaacaccgcataagtatgtct |
517 |
Q |
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| T |
55453058 |
atttccagatcctgagttccttgtggagttatggtaaaaaaagttggatacaggttaactgcagttctattaggagctcgaacaccgcataagtatgtct |
55453157 |
T |
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| Q |
518 |
ctgtgctg |
525 |
Q |
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| T |
55453158 |
ctgtgctg |
55453165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 320 - 525
Target Start/End: Complemental strand, 55705363 - 55705157
Alignment:
| Q |
320 |
caactgacaaagttattcttactatgtggttcatacttcctgccaaaacaatttcaccaaagctaaaatcttcacttggttgagtgacattgatttgtat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55705363 |
caactgacaaagttattcttactatgtggttcatacttcctgccaaaacaatttcaccaaagctaaaatcttcacttggttgagtgacattgatttgtat |
55705264 |
T |
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| Q |
420 |
ttccagatcctgagttccttgtggagttatggt-nnnnnnngttggatacaggttcactgcagttctattaggagctcgaacaccgcataagtatgtctc |
518 |
Q |
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| T |
55705263 |
ttccagatcccgtgttctatgtggagttatggtaaaaaaaagttggatacaagttaactgcagttccattaggagctagaacaccgcacaagtatgtctc |
55705164 |
T |
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| Q |
519 |
tgtgctg |
525 |
Q |
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||||||| |
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| T |
55705163 |
tgtgctg |
55705157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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