View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_42 (Length: 254)
Name: NF3083_low_42
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 24429971 - 24429711
Alignment:
| Q |
2 |
tgagatgaaaagcagagagaagagtaacagaagcaaataaaataattgctaatggtcctgcaatccatccaatttgtgcaatgctccatgctaatgataa |
101 |
Q |
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| T |
24429971 |
tgagaagaaaagcagagagaagagtaacagaagcaaataaaataattgctaatggtcctgcaatccatccaatttgtgcaatgctccatgctaatgataa |
24429872 |
T |
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| Q |
102 |
cactcctgatcctatcactcctgtcactatgtgtgccactgctgtccatactgttcctgttacaaacaaatcaccgtaattttgttaaagttttaaagtg |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24429871 |
cactcctgatcctattactcctgtcactatgtgtgccactgctgtccatactgttcctgttacaaacaaatcaccgtaattttgttaaagctttaaagtg |
24429772 |
T |
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| Q |
202 |
taattttgacgt--------ccgtcaatccaaacatgtactaaagaccattgtcaagattc |
254 |
Q |
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| T |
24429771 |
taattttgatgtcaaatttaccgtcaatccaaacatatactaaagaccattgtcaagattc |
24429711 |
T |
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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 42369869 - 42369770
Alignment:
| Q |
52 |
aatggtcctgcaatccatccaatttgtgcaatgctccatgctaatgataacactcctgatcctatcactcctgtcactatgtgtgccactgctgtccata |
151 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
42369869 |
aatggtccaacaatccatccaagttgtgcaatgctccatggcaaagataacactcctgatcctatcacccctgtcactatgtgtgctactgctgtccata |
42369770 |
T |
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