View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_5 (Length: 524)

Name: NF3083_low_5
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_5
NF3083_low_5
[»] chr5 (16 HSPs)
chr5 (226-514)||(10412217-10412496)
chr5 (246-499)||(10410664-10410908)
chr5 (32-204)||(10408710-10408882)
chr5 (290-499)||(25725808-25726010)
chr5 (314-499)||(25502025-25502201)
chr5 (290-384)||(40382864-40382959)
chr5 (421-499)||(8081534-8081612)
chr5 (314-378)||(25507050-25507115)
chr5 (227-265)||(25502229-25502267)
chr5 (209-262)||(21637364-21637416)
chr5 (416-500)||(6742569-6742653)
chr5 (428-496)||(40382760-40382828)
chr5 (430-499)||(25506938-25507007)
chr5 (227-262)||(4895928-4895963)
chr5 (166-204)||(4857475-4857513)
chr5 (168-204)||(25017657-25017693)
[»] chr4 (6 HSPs)
chr4 (209-442)||(25054166-25054390)
chr4 (314-501)||(4847686-4847865)
chr4 (315-497)||(28395555-28395732)
chr4 (290-368)||(11809887-11809966)
chr4 (209-262)||(18807582-18807634)
chr4 (227-283)||(11809948-11810005)
[»] chr3 (11 HSPs)
chr3 (209-467)||(4608947-4609183)
chr3 (253-499)||(4602166-4602403)
chr3 (314-499)||(28133653-28133830)
chr3 (290-499)||(27682101-27682301)
chr3 (421-499)||(41874542-41874620)
chr3 (388-495)||(26667002-26667111)
chr3 (316-384)||(27972530-27972595)
chr3 (272-308)||(27683855-27683891)
chr3 (209-262)||(26667218-26667268)
chr3 (166-204)||(20945284-20945322)
chr3 (166-204)||(39931965-39932003)
[»] chr2 (13 HSPs)
chr2 (290-499)||(45035064-45035265)
chr2 (290-499)||(45033269-45033470)
chr2 (314-499)||(1015655-1015831)
chr2 (314-363)||(17308628-17308677)
chr2 (335-384)||(33187280-33187329)
chr2 (428-500)||(14007778-14007850)
chr2 (209-283)||(45035008-45035082)
chr2 (421-499)||(17308719-17308797)
chr2 (388-475)||(3372476-3372564)
chr2 (315-362)||(4399574-4399621)
chr2 (227-265)||(17308562-17308600)
chr2 (429-475)||(33187197-33187243)
chr2 (164-204)||(2131842-2131882)
[»] chr7 (7 HSPs)
chr7 (246-350)||(964953-965057)
chr7 (314-499)||(21464439-21464622)
chr7 (421-475)||(29924662-29924716)
chr7 (209-263)||(21631449-21631502)
chr7 (335-373)||(29924591-29924629)
chr7 (247-278)||(965049-965080)
chr7 (227-262)||(9878367-9878402)
[»] chr1 (9 HSPs)
chr1 (290-501)||(44782181-44782385)
chr1 (247-345)||(9217499-9217597)
chr1 (290-499)||(46679609-46679812)
chr1 (220-259)||(35891592-35891631)
chr1 (166-204)||(32152242-32152280)
chr1 (229-257)||(3284469-3284497)
chr1 (229-257)||(9311996-9312024)
chr1 (166-202)||(13145504-13145540)
chr1 (168-204)||(35365967-35366003)
[»] chr8 (8 HSPs)
chr8 (290-499)||(30634229-30634431)
chr8 (290-384)||(1175018-1175113)
chr8 (416-477)||(35674859-35674920)
chr8 (399-498)||(35673333-35673433)
chr8 (209-283)||(1174962-1175036)
chr8 (421-499)||(1175145-1175223)
chr8 (227-262)||(35673507-35673542)
chr8 (166-204)||(36309579-36309617)
[»] chr6 (6 HSPs)
chr6 (335-501)||(15688988-15689146)
chr6 (314-384)||(24544662-24544732)
chr6 (314-385)||(34350440-34350511)
chr6 (392-468)||(9373602-9373679)
chr6 (209-257)||(33869194-33869241)
chr6 (227-257)||(15868357-15868387)
[»] scaffold0570 (1 HSPs)
scaffold0570 (335-385)||(3043-3093)
[»] scaffold0060 (1 HSPs)
scaffold0060 (209-262)||(9188-9240)
[»] scaffold0251 (1 HSPs)
scaffold0251 (227-257)||(6191-6221)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 226 - 514
Target Start/End: Original strand, 10412217 - 10412496
Alignment:
Q  226 aattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagtt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10412217 aattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatccagataacttggagagcaagtaacctagtagaaagtt 10412316  T
Q  326 agttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatc-ttgtgatga 424  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||           ||||| || ||||||||||||||||| ||||||| |    
T  10412317 agttagggagttagttactccaaatcactataaataagctacacctatgtact----------atttcatatcttttattcatttgcatctttgtgataa 10412406  T
Q  425 cttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacactcccttgacctatg 514  Q
     |  |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| | ||||||||||    
T  10412407 ttcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatcctttaatttataacacttctttgacctatg 10412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 246 - 499
Target Start/End: Original strand, 10410664 - 10410908
Alignment:
Q  246 ctattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 345  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  10410664 ctattagagtatagtgaaaaggtaacttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagggagttagttactc 10410763  T
Q  346 caaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacaca 444  Q
    |||||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  10410764 caaatcactataaataagctacacctatgtact----------atttcacatcttttattcatttgcatctttgggatgactcctagagagaattacaca 10410853  T
Q  445 atctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    ||||||||||| |||||||||||| |||||||| | ||| |||| ||||||||||    
T  10410854 atctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 10408710 - 10408882
Alignment:
Q  32 aagtagtttttactggggcagtctctatatataaacacctatttgactaaagattatccttaaataataaatttttgtttaaattatccttatataaaca 131  Q
    |||||||||||| ||||  ||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  10408710 aagtagtttttattgggcgagtctctgtatataaacacctatttaactaaagattattcttaaatgataaatttctgtttaaattatccttatataaaca 10408809  T
Q  132 cctaaacatacctctaattattattattacttcaactaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  10408810 cctaaacatacctttaactattattattactccaactaacttttcttaaaatatgaaaagtaatattgaatac 10408882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 290 - 499
Target Start/End: Complemental strand, 25726010 - 25725808
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 388  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||||    |    
T  25726010 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagttacacctatgtactatttc----a 25725915  T
Q  389 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 487  Q
    ||     || |||||| |  |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| | ||| |||    
T  25725914 tt-----atcttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctt 25725820  T
Q  488 taattcataaca 499  Q
    | ||||||||||    
T  25725819 tgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 499
Target Start/End: Complemental strand, 25502201 - 25502025
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 413  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||| |||| |||||||||           || || || |||||| || |||      
T  25502201 tagtagaaagttagttagggagttagttactccaattcactataaataagttacatctatgtact----------attccatatcttttatacaattgtt 25502112  T
Q  414 tcttg-tgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    ||||| | |||||| ||||||||||||||||||||||| |||| |||||||||||  |||||||| | ||| || | ||||||||||    
T  25502111 tcttgataatgactcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 384
Target Start/End: Complemental strand, 40382959 - 40382864
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 384  Q
    ||||| ||||||||| |||| | ||| |||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  40382959 agatatcttggagagtaagttatctatgtagaaagttagttagggagttaggtactccaagtcactataaataagctacacctatatactatttca 40382864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 499
Target Start/End: Original strand, 8081534 - 8081612
Alignment:
Q  421 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| | ||  |||| ||||||||||    
T  8081534 atgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattcataaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 25507115 - 25507050
Alignment:
Q  314 tagtagaaagttagttagagggtt-agttactccaaatcactataaataagctacacctatgtact 378  Q
    ||||||||||||| |||| | ||| ||||||||||| |||||||||||||||||||||||||||||    
T  25507115 tagtagaaagttacttagggagtttagttactccaattcactataaataagctacacctatgtact 25507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 25502267 - 25502229
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtgagaa 265  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25502267 attttgagtttgagggggactattagagtatagtgagaa 25502229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 21637416 - 21637364
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 262  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  21637416 aattggtgaatttctc-aatcttgagtttgagggggactattagagtatagtga 21637364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 500
Target Start/End: Original strand, 6742569 - 6742653
Alignment:
Q  416 ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacac 500  Q
    |||||||||||  ||||||||| ||||||||||||||||| |||||||||||  |||||| | | |||  ||| |||||||||||    
T  6742569 ttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 40382828 - 40382760
Alignment:
Q  428 ctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcata 496  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| | | ||| |||| |||||||    
T  40382828 ctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattcata 40382760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 499
Target Start/End: Complemental strand, 25507007 - 25506938
Alignment:
Q  430 agagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    ||||||||||||| |||||||||||| |||||||||||  || ||||| | ||| |||| ||||||||||    
T  25507007 agagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttattcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 4895963 - 4895928
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtga 262  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4895963 attttgagtttgagggggactattagagtattgtga 4895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 4857475 - 4857513
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  4857475 actaacttatcttaaaatatgaaaagtcaaatttaatac 4857513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 25017657 - 25017693
Alignment:
Q  168 taacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||| |||||||||||||||||| |||||||||||    
T  25017657 taacttgtcttaaaatatgaaaagtcaaatttaatac 25017693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 209 - 442
Target Start/End: Original strand, 25054166 - 25054390
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaag 308  Q
    |||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25054166 aattggtgaatttccccaattttgagttcgagggggactattagagtatagtgagaaggtaacttgaagtgcaagcaatctagagaacttggagagcaag 25054265  T
Q  309 taacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcat 408  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||          |||||     
T  25054266 taacatagtagaacgttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcacatctttt----------attcaa 25054355  T
Q  409 ttgcatctt-gtgatgacttctagagagaattaca 442  Q
    ||||||||| ||||||||||| |||||||||||||    
T  25054356 ttgcatctttgtgatgacttccagagagaattaca 25054390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 501
Target Start/End: Complemental strand, 4847865 - 4847686
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 413  Q
    |||| ||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | ||||          || || ||| || |||      
T  4847865 tagtggaaagttagttagggagttagttactccaagtcactataaataagctacatctatgtactatatcact---------atcttatatacaattgtt 4847775  T
Q  414 tcttg-tgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacact 501  Q
    ||||| | |||||||||| ||||||||||| |||||||||||| ||| |||||||| |||||||| | ||| |||||||||||||||||    
T  4847774 tcttggtaatgacttctatagagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacact 4847686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 497
Target Start/End: Complemental strand, 28395732 - 28395555
Alignment:
Q  315 agtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcat 414  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||  |||||| ||||| || ||||       || |||  | |  ||    
T  28395732 agtagaaaattagttagggagttatttactccaaatcactataaataagctacaccactgtactatttcatatctttta------ttcatttctatctat 28395639  T
Q  415 ctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataa 497  Q
    ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||| | ||| |||| ||||||||    
T  28395638 ctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatcctttgattcataa 28395555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 11809966 - 11809887
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctaca 368  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| |||||||||| || |||||    
T  11809966 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaacaaactaca 11809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 18807634 - 18807582
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 262  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  18807634 aattggtgaattttccca-ttttgagtttgagggggactattagagtatagtga 18807582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 11810005 - 11809948
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 283  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||| |||||| |||||    
T  11810005 attttaagtttgagggggactattagagtatagtgaagaagataacttggagagcaag 11809948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 209 - 467
Target Start/End: Original strand, 4608947 - 4609183
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaag 308  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4608947 aattagtgaatttttcca-ttttgagtttgagggggactattagagtatagtgagaaggtaacttggagtgcaagcaatctagataacttggagagcaag 4609045  T
Q  309 taacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcat 408  Q
    |||| || ||||||            ||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||     
T  4609046 taacataatagaaa------------gttagttactccaaatcactataaataagctacacctatgtact----------atttcatatcttttattcaa 4609123  T
Q  409 ttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttga 467  Q
    ||||||| ||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  4609124 ttgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttga 4609183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 253 - 499
Target Start/End: Original strand, 4602166 - 4602403
Alignment:
Q  253 agtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactccaaatca 352  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  4602166 agtatagtgagaaggtaacttgtagtgcaagcaatcaagataacttggagagcaagtaacatagtagaaagttagttagggagttagttactccaaatca 4602265  T
Q  353 ctataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatc 451  Q
    ||||||||||||||||||||||||||           ||||| || ||||||| | ||||||| |||| ||||||  ||||||||| || ||||| || |    
T  4602266 ctataaataagctacacctatgtact----------atttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacc 4602355  T
Q  452 tttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  4602356 tttccattgcatttgatctagaaccatggaatcctttgattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 314 - 499
Target Start/End: Original strand, 28133653 - 28133830
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 413  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||         ||| ||||||||| |||||    
T  28133653 tagtagaaagttagttagagagttagttactccaagtcactataaataagctacacctatgtactatttcac---------catcttttattcaattgca 28133743  T
Q  414 tc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    || ||||||||||| |||||||||| |||||||| || ||||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  28133744 tctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattcataaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 27682101 - 27682301
Alignment:
Q  290 agataacttggagagcaagtaacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatat 389  Q
    ||||||||||||||||||| || |||||| |||||||||||| | ||||||||||||||||||| |||||||||| | |||||||||||               
T  27682101 agataacttggagagcaagcaatctagtataaagttagttagggagttagttactccaaatcacaataaataagcaagacctatgtact----------a 27682190  T
Q  390 tttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattcttt 488  Q
    || ||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| || ||||| |||||||||||  |||||||| | ||| ||||    
T  27682191 ttccacatcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatccttt 27682290  T
Q  489 aattcataaca 499  Q
     ||||||||||    
T  27682291 gattcataaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 499
Target Start/End: Original strand, 41874542 - 41874620
Alignment:
Q  421 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||| | ||| |||| ||||||||||    
T  41874542 atgactcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 495
Target Start/End: Complemental strand, 26667111 - 26667002
Alignment:
Q  388 attttcacatattttattcatttgc-atctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattc 485  Q
    ||||||| || |||||||||||| | ||||| |||||||||  ||| ||||||||||||||||| ||||| || ||||||||  |||||||| ||||| |    
T  26667111 attttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctagaaccatgaaatcc 26667012  T
Q  486 tttaattcat 495  Q
    ||| ||||||    
T  26667011 tttgattcat 26667002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 27972530 - 27972595
Alignment:
Q  316 gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 384  Q
    ||||||||||||||||||  ||| | ||||||||||||||||||| ||||||||| ||||||| |||||    
T  27972530 gtagaaagttagttagag--ttact-actccaaatcactataaatcagctacaccaatgtactatttca 27972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 27683891 - 27683855
Alignment:
Q  272 ttggagtgcaagcaatctagataacttggagagcaag 308  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27683891 ttggagagcaagcaatctagataacttggagagcaag 27683855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 26667268 - 26667218
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 262  Q
    |||||||||||||||| |   |||||||||||||||||||||| ||||||||||    
T  26667268 aattggtgaatttttcca---ttgagtttgagggggactattacagtatagtga 26667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 20945284 - 20945322
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  20945284 actaacttgtcttaaaatatgaaaagtcaaatttaatac 20945322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 39932003 - 39931965
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  39932003 actaacttgtcttaaaatatgaaaactaaaatttaatac 39931965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 45035064 - 45035265
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 388  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||         |||    
T  45035064 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgta---------ata 45035154  T
Q  389 ttttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 487  Q
     ||||| || ||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| |||||||||||  |||||||| | ||| |||    
T  45035155 -tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatcctt 45035253  T
Q  488 taattcataaca 499  Q
    | ||||||||||    
T  45035254 tgattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 45033269 - 45033470
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 388  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||              
T  45033269 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttaccccaaatcactgtaaataagctacacctatgtact---------- 45033358  T
Q  389 ttttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 487  Q
      |||| || ||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| |||||||||||  |||||||| | |||  ||    
T  45033359 aattcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttt 45033458  T
Q  488 taattcataaca 499  Q
    | ||||||||||    
T  45033459 tgattcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 499
Target Start/End: Original strand, 1015655 - 1015831
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 413  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||           || || || |||||| || |||      
T  1015655 tagtagaaagttagttacggagttagttactccaaatcactataaataagccacacctatgtact----------attccatatcttttatacaattgtt 1015744  T
Q  414 tctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||| || | |||| | |||||||||||||||||||||||||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  1015745 tcttggtaacgactccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 17308628 - 17308677
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataag 363  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17308628 tagtagaaagttagttagggagttagttactccaaatcactataaataag 17308677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 33187329 - 33187280
Alignment:
Q  335 gttagttactccaaatcactataaataagctacacctatgtactgtttca 384  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  33187329 gttagttactccaagtcactataaataagctacacctatgtactatttca 33187280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 14007778 - 14007850
Alignment:
Q  428 ctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacac 500  Q
    ||||||||||||| |||||| ||||||| |||||||||||| |||||||| | ||| |||| |||||||||||    
T  14007778 ctagagagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttgattcataacac 14007850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 45035008 - 45035082
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 283  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||    
T  45035008 aattggtgaatttcccta-ttttgagtttgagggggactattagagtatagtgtagaagataacttggagagcaag 45035082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 499
Target Start/End: Original strand, 17308719 - 17308797
Alignment:
Q  421 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||  |||||| | | ||| |||| ||||||||||    
T  17308719 atgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttgattcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 3372564 - 3372476
Alignment:
Q  388 attttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaac 475  Q
    ||||||| |||||||||||||||  ||||| ||| ||||| | ||||||||||| | |||||||||||| |||| ||||||| ||||||    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaac 3372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 4399621 - 4399574
Alignment:
Q  315 agtagaaagttagttagagggttagttactccaaatcactataaataa 362  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||    
T  4399621 agtagaaagttagttagggagttagttactccaactcactataaataa 4399574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 17308562 - 17308600
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtgagaa 265  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  17308562 attttgagtttgagggggactattagaatatagtgagaa 17308600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 33187243 - 33187197
Alignment:
Q  429 tagagagaattacacaatctatctttcgattgcatttgacttagaac 475  Q
    |||||| |||||||||||||||||||| ||| |||||||| ||||||    
T  33187243 tagagataattacacaatctatctttccattacatttgacctagaac 33187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 2131882 - 2131842
Alignment:
Q  164 caactaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||||| |||| ||||||||||||| |||||||||||    
T  2131882 caactaacttgtctttaaatatgaaaagtcaaatttaatac 2131842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 246 - 350
Target Start/End: Original strand, 964953 - 965057
Alignment:
Q  246 ctattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 345  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  964953 ctattagagtatagtgagaaggtaacttggagtgcaagcaatctagataacttggagagcaagtaatatagtagaaagttagttagggagttagttactc 965052  T
Q  346 caaat 350  Q
    |||||    
T  965053 caaat 965057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 314 - 499
Target Start/End: Original strand, 21464439 - 21464622
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 413  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||| || | ||||       || |||||||| |     
T  21464439 tagtagaaagttagttagggggttagttactccaaatcactgtaaataagctacacttatgtactattttacttctttt------attcattcattttct 21464532  T
Q  414 tc--ttgtgatgacttct--agagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
     |  |||| |||||| ||  |||||||||||||||||||||||||| |||||||||||  |||||||| | |||||||| ||| ||||||    
T  21464533 acctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatttataaca 21464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 475
Target Start/End: Original strand, 29924662 - 29924716
Alignment:
Q  421 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaac 475  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29924662 atgactcctagagagaattacacaatctatctttccattgcatttgacctagaac 29924716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 21631502 - 21631449
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgag 263  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  21631502 aattggtgaattttccca-ttttgagtttgagggggactattagagtatagtgag 21631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 29924591 - 29924629
Alignment:
Q  335 gttagttactccaaatcactataaataagctacacctat 373  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29924591 gttagttactccaagtcactataaataagctacacctat 29924629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 278
Target Start/End: Complemental strand, 965080 - 965049
Alignment:
Q  247 tattagagtatagtgagaaggtaatttggagt 278  Q
    ||||||||||||||||||||||||||||||||    
T  965080 tattagagtatagtgagaaggtaatttggagt 965049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 9878402 - 9878367
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtga 262  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9878402 attttgagtttgaggaggactattagagtatagtga 9878367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 290 - 501
Target Start/End: Complemental strand, 44782385 - 44782181
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 388  Q
    ||||||||| |||||||||| | ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    |    
T  44782385 agataacttagagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttc----a 44782290  T
Q  389 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 487  Q
    ||     || |||||| || |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| |||    
T  44782289 tt-----atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcctt 44782195  T
Q  488 taattcataacact 501  Q
    ||||||||||||||    
T  44782194 taattcataacact 44782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 9217499 - 9217597
Alignment:
Q  247 tattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  9217499 tattagagtatagtgagaaggtaacttggagtgcaagcaatctagatatcttggagagcaagtaatctagtagaaagttagttagggagttaattactc 9217597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 46679609 - 46679812
Alignment:
Q  290 agataacttggagagcaagtaaccta--gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacat 387  Q
    ||||||||||| ||||||| || |||  ||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||  ||||       
T  46679609 agataacttggggagcaagcaaactatagtagaaaattagttagggagttagttactccaagtcactataaataagctacacctatgtactacttca--- 46679705  T
Q  388 attttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattct 486  Q
           ||| |||||| || |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| | ||| ||    
T  46679706 ------tcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcct 46679799  T
Q  487 ttaattcataaca 499  Q
    || ||||||||||    
T  46679800 ttgattcataaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 35891631 - 35891592
Alignment:
Q  220 ttttctaattttgagtttgagggggactattagagtatag 259  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  35891631 ttttctcatttagagtttgagggggactattagagtatag 35891592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 32152280 - 32152242
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  32152280 actaacttatcttaaaatatgaaaagtcaaatttaatac 32152242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 3284469 - 3284497
Alignment:
Q  229 tttgagtttgagggggactattagagtat 257  Q
    |||||||||||||||||||||||||||||    
T  3284469 tttgagtttgagggggactattagagtat 3284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 9311996 - 9312024
Alignment:
Q  229 tttgagtttgagggggactattagagtat 257  Q
    |||||||||||||||||||||||||||||    
T  9311996 tttgagtttgagggggactattagagtat 9312024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 13145540 - 13145504
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaat 202  Q
    |||||||| |||||||||||||||||| |||||||||    
T  13145540 actaacttatcttaaaatatgaaaagtcaaatttaat 13145504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 35365967 - 35366003
Alignment:
Q  168 taacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||| |||||||||||||||||| |||||||||||    
T  35365967 taacttgtcttaaaatatgaaaagtcaaatttaatac 35366003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 290 - 499
Target Start/End: Complemental strand, 30634431 - 30634229
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 388  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    |    
T  30634431 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttc----a 30634336  T
Q  389 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 487  Q
    ||     || |||||| || |||  |||| || ||||||  |||||||||||||| |||||||||||| |||||||||||| || |||||   ||| |||    
T  30634335 tt-----atcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatagaatcctt 30634241  T
Q  488 taattcataaca 499  Q
    | ||||||||||    
T  30634240 tgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 1175018 - 1175113
Alignment:
Q  290 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 384  Q
    |||||||||||||||||||| | ||| |||||||||||| | | | |||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  1175018 agataacttggagagcaagttatctatgtagaaagttaggtggggagttagttactccaagtcactataaataagttacacctatgtactatttca 1175113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 35674920 - 35674859
Alignment:
Q  416 ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaacca 477  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  35674920 ttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaacca 35674859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 498
Target Start/End: Complemental strand, 35673433 - 35673333
Alignment:
Q  399 ttttattcatttgcatct-tgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataa 497  Q
    ||||||||||||  |||| |||||||| |  |||||||||||| |||||||||||||| ||||||||||||||||||||| | ||| || || |||||||    
T  35673433 ttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcctctatttcataa 35673334  T
Q  498 c 498  Q
    |    
T  35673333 c 35673333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 1174962 - 1175036
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 283  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||| ||| |||||| |||||    
T  1174962 aattggtgaatttttcca-ttttgagtttgaggaggactattagagtatagtgaagaagataacttggagagcaag 1175036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 499
Target Start/End: Original strand, 1175145 - 1175223
Alignment:
Q  421 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 499  Q
    |||||| ||||| | |||||||||||||||||||  ||| |||||||| ||||||||   ||| |||||||||||||||    
T  1175145 atgactcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 35673542 - 35673507
Alignment:
Q  227 attttgagtttgagggggactattagagtatagtga 262  Q
    |||||||||||||||||||||| |||||||||||||    
T  35673542 attttgagtttgagggggactaatagagtatagtga 35673507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 36309579 - 36309617
Alignment:
Q  166 actaacttttcttaaaatatgaaaagtaaaatttaatac 204  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  36309579 actaacttgtcttaaaatatgaaaagtcaaatttaatac 36309617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 501
Target Start/End: Original strand, 15688988 - 15689146
Alignment:
Q  335 gttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatctt-gtgatgacttctagag 433  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||   || ||||        ||||||||||  ||||| ||||||||| ||||||    
T  15688988 gttagttactccaaatcactataaataagctactcctatgtactattttctatctttt--------ttattcatttctatctttgtgatgact-ctagag 15689078  T
Q  434 agaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacact 501  Q
    |||||||||||||||||||||| |||||||||||| ||||| || | ||| |||| ||||||||||||    
T  15689079 agaattacacaatctatctttccattgcatttgacctagaatcatggaatcctttgattcataacact 15689146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 24544662 - 24544732
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 384  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24544662 tagtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca 24544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 34350511 - 34350440
Alignment:
Q  314 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcac 385  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  34350511 tagtagaaagttagttagggagttagttactccaaatcattataaataaactacacctatgtactatttcac 34350440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 468
Target Start/End: Complemental strand, 9373679 - 9373602
Alignment:
Q  392 tcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgac 468  Q
    |||||| ||||||||||||  ||||| || |||||| ||| ||| ||||||||| |||||||||| ||||||||||||    
T  9373679 tcacatcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttgac 9373602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 33869194 - 33869241
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtat 257  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  33869194 aattggtgaattttccca-ttttgagtttgagggggactattagagtat 33869241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 15868357 - 15868387
Alignment:
Q  227 attttgagtttgagggggactattagagtat 257  Q
    |||||||||||||||||||||||||||||||    
T  15868357 attttgagtttgagggggactattagagtat 15868387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 3093 - 3043
Alignment:
Q  335 gttagttactccaaatcactataaataagctacacctatgtactgtttcac 385  Q
    |||||||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  3093 gttagttactccaagtcactataaatatgctacaccgatgtactatttcac 3043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 9240 - 9188
Alignment:
Q  209 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 262  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||||||||||    
T  9240 aattggtgaatttctc-aatcttgagtttgaggaggactattagagtatagtga 9188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 6191 - 6221
Alignment:
Q  227 attttgagtttgagggggactattagagtat 257  Q
    |||||||||||||||||||||||||||||||    
T  6191 attttgagtttgagggggactattagagtat 6221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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