View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_58 (Length: 236)

Name: NF3083_low_58
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_58
NF3083_low_58
[»] chr5 (1 HSPs)
chr5 (104-144)||(20464598-20464638)
[»] chr4 (1 HSPs)
chr4 (104-144)||(2443359-2443399)
[»] chr1 (1 HSPs)
chr1 (104-144)||(2089844-2089884)
[»] chr8 (1 HSPs)
chr8 (104-141)||(16821066-16821103)
[»] chr7 (2 HSPs)
chr7 (104-144)||(16679037-16679077)
chr7 (104-144)||(17653273-17653313)
[»] chr3 (1 HSPs)
chr3 (104-144)||(25483910-25483950)


Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 20464638 - 20464598
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  20464638 aagtattaagtgtaacatatatattggcctattattattag 20464598  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 2443399 - 2443359
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2443399 aagtattaagtgtaacatatatattggcctattattattag 2443359  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 2089884 - 2089844
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2089884 aagtattaagtgtaacatatatattggcctattattattag 2089844  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 16821103 - 16821066
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattat 141  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16821103 aagtattaagtgtaacatatatattggcctattattat 16821066  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 16679077 - 16679037
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  16679077 aagtattaagtgtaacatatatattggcctatcattattag 16679037  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 17653313 - 17653273
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  17653313 aagtattaagtgtaacatatatattggcctatcattattag 17653273  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 25483910 - 25483950
Alignment:
Q  104 aagtattaagagtaacatatatattggcctattattattag 144  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  25483910 aagtattaagtgtaacatgtatattggcctattattattag 25483950  T

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