View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_61 (Length: 233)
Name: NF3083_low_61
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 34340067 - 34339856
Alignment:
| Q |
1 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggctatgacttacacggttataacaatctttcattgaaaccaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340067 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggctatgacttacacggttataacaatctttcattgaaaccaac |
34339968 |
T |
|
| Q |
101 |
ctttatggagg-nnnnnnntcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactg |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34339967 |
ctttatggaggaaaaaaaatcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactg |
34339868 |
T |
|
| Q |
200 |
gttgtgctatgt |
211 |
Q |
| |
|
|||||||||||| |
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| T |
34339867 |
gttgtgctatgt |
34339856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26127928 - 26127713
Alignment:
| Q |
1 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggctatgacttacacggttataacaa-----tctttcattgaaa |
95 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26127928 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggctatgacttacacggttataacaaaaaaatctttcattgaaa |
26127829 |
T |
|
| Q |
96 |
ccaacctttatggaggnnnnnnntcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatg |
195 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26127828 |
ccaacctttatggaggaaaaaaatcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatg |
26127729 |
T |
|
| Q |
196 |
actggttgtgctatgt |
211 |
Q |
| |
|
|||||||||||||||| |
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| T |
26127728 |
actggttgtgctatgt |
26127713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23101198 - 23100988
Alignment:
| Q |
1 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggctatgacttacacggttataacaatctttcattgaaaccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23101198 |
acaacaccagaaaattgctacagaa-aaacctttttgcctactgctacactatggtggctatgacttacacggttataacaatctttcattgaaaccaac |
23101100 |
T |
|
| Q |
101 |
ctttatggagg-nnnnnnntcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactg |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23101099 |
ctttatggaggaaaaaaaatcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactg |
23101000 |
T |
|
| Q |
200 |
gttgtgctatgt |
211 |
Q |
| |
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| |||||||||| |
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| T |
23100999 |
gatgtgctatgt |
23100988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 6719749 - 6719657
Alignment:
| Q |
119 |
tcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactggttgtgctatgt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6719749 |
tcagctatcctaagcaataatcaacataatcacaaaaatcagctttcataagctatcctaatatacattttttcatgactggttgtgctatgt |
6719657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6720178 - 6720120
Alignment:
| Q |
1 |
acaacaccagaaaattgctacagaagaaacctttttgcctactgctacactatggtggc |
59 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
6720178 |
acaacaccagaaaattgctacaaaagaaacctttttgcctactgttacactatggtggc |
6720120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 6719787 - 6719756
Alignment:
| Q |
52 |
atggtggctatgacttacacggttataacaat |
83 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6719787 |
atggtggctatgacttacacggttataacaat |
6719756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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