View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_62 (Length: 232)

Name: NF3083_low_62
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_62
NF3083_low_62
[»] chr3 (8 HSPs)
chr3 (51-232)||(41649686-41649867)
chr3 (5-51)||(23029838-23029884)
chr3 (1-51)||(41650148-41650198)
chr3 (1-51)||(49741934-49741984)
chr3 (1-48)||(49303413-49303460)
chr3 (1-51)||(49501367-49501417)
chr3 (1-49)||(2447798-2447845)
chr3 (1-51)||(47067961-47068011)
[»] chr1 (10 HSPs)
chr1 (1-55)||(33686379-33686433)
chr1 (1-51)||(7014609-7014659)
chr1 (1-51)||(10308674-10308724)
chr1 (1-51)||(12927029-12927079)
chr1 (1-51)||(43138484-43138534)
chr1 (1-50)||(15399273-15399322)
chr1 (1-51)||(49150724-49150774)
chr1 (1-48)||(30858705-30858752)
chr1 (13-51)||(45053324-45053362)
chr1 (1-43)||(22605650-22605692)
[»] chr8 (8 HSPs)
chr8 (1-51)||(1217993-1218043)
chr8 (1-51)||(4759040-4759090)
chr8 (1-51)||(5912951-5913001)
chr8 (5-51)||(9039867-9039913)
chr8 (1-51)||(4322898-4322948)
chr8 (1-51)||(15739541-15739591)
chr8 (1-51)||(35161807-35161857)
chr8 (1-47)||(42182869-42182915)
[»] chr7 (7 HSPs)
chr7 (1-51)||(40144618-40144668)
chr7 (1-49)||(3742204-3742252)
chr7 (1-51)||(37450202-37450252)
chr7 (6-51)||(4034992-4035037)
chr7 (1-48)||(33803126-33803173)
chr7 (1-51)||(14678506-14678555)
chr7 (2-51)||(30362562-30362611)
[»] chr5 (9 HSPs)
chr5 (1-51)||(2786912-2786962)
chr5 (1-51)||(8688284-8688334)
chr5 (1-51)||(7662039-7662089)
chr5 (1-51)||(34954228-34954278)
chr5 (1-51)||(12144248-12144298)
chr5 (1-51)||(43147274-43147324)
chr5 (3-51)||(18171973-18172021)
chr5 (1-51)||(40033835-40033885)
chr5 (22-51)||(1081744-1081773)
[»] chr4 (14 HSPs)
chr4 (1-51)||(42119176-42119226)
chr4 (1-50)||(779282-779331)
chr4 (3-51)||(33985286-33985334)
chr4 (3-51)||(51243013-51243061)
chr4 (1-51)||(36046741-36046791)
chr4 (1-51)||(54808839-54808889)
chr4 (1-48)||(9242740-9242787)
chr4 (10-56)||(45042853-45042899)
chr4 (1-51)||(47020266-47020316)
chr4 (1-51)||(52032533-52032583)
chr4 (1-51)||(54703838-54703888)
chr4 (7-51)||(43502165-43502209)
chr4 (1-51)||(34939194-34939244)
chr4 (12-51)||(37694356-37694395)
[»] chr2 (16 HSPs)
chr2 (1-51)||(6728820-6728870)
chr2 (1-51)||(21083969-21084019)
chr2 (1-51)||(41192218-41192268)
chr2 (1-51)||(1888120-1888170)
chr2 (1-51)||(5290534-5290584)
chr2 (1-51)||(5814370-5814420)
chr2 (1-51)||(26257610-26257660)
chr2 (1-51)||(32737707-32737757)
chr2 (1-51)||(35151364-35151414)
chr2 (1-51)||(40642646-40642696)
chr2 (1-50)||(37057415-37057464)
chr2 (4-51)||(34619739-34619786)
chr2 (1-51)||(4616479-4616529)
chr2 (1-51)||(2195001-2195051)
chr2 (2-51)||(37891931-37891980)
chr2 (1-44)||(6903543-6903587)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-51)||(20295-20345)
[»] scaffold0753 (1 HSPs)
scaffold0753 (1-48)||(4222-4269)
[»] chr6 (4 HSPs)
chr6 (1-48)||(2419625-2419672)
chr6 (1-51)||(3514517-3514567)
chr6 (14-51)||(30633963-30634000)
chr6 (13-51)||(11599215-11599253)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-46)||(25815-25860)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 41649867 - 41649686
Alignment:
Q  51 gcgagcaaaatatgtcatgtgaagagcagaattcaatttgtttcctctggcggtcatccatccgtcttttcttgttattccattttctcaaatgttgcac 150  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41649867 gcgagcaaaatgtgccatatgaagagcagaattcaatttgtttcctctggcggtcatccatccgtcttttcttgttattccattttctcaaatgttgcac 41649768  T
Q  151 atagtttcaataacaaaaatttcaatcagcatcaaagtaattttgtatggtgagagatgatagtttaattacgtcaaatctt 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41649767 atagtttcaataacaaaaatttcaatcagcatcaaggtaattttgtatggtgagagatgatagtttaattacgtcaaatctt 41649686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 23029884 - 23029838
Alignment:
Q  5 agggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23029884 agggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 23029838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41650198 - 41650148
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41650198 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 41650148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49741934 - 49741984
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49741934 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 49741984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49303460 - 49303413
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49303460 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagt 49303413  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49501367 - 49501417
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  49501367 aaagaggggtagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 49501417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2447845 - 2447798
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagta 49  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  2447845 aaagagggggagagagtgggaggagaaaatgtgagg-aaagaggaagta 2447798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47067961 - 47068011
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||| | ||||||||| | ||||||||||    
T  47067961 aaagagggggagagagtgggaggagatagtgtgaggaatataggaagtatg 47068011  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33686379 - 33686433
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatgcgag 55  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33686379 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgcgag 33686433  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7014609 - 7014659
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7014609 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 7014659  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10308724 - 10308674
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10308724 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 10308674  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12927079 - 12927029
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12927079 aaagagggggaaagagtaggaggagaaaatgtgaggaaaagaggaagtatg 12927029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43138484 - 43138534
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43138484 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 43138534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15399322 - 15399273
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtat 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15399322 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtat 15399273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49150774 - 49150724
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  49150774 aaagagggggagaaagtgggaggagaaaatgtgaggaaaagaggaagtatg 49150724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30858752 - 30858705
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  30858752 aaagagggggagagagtgggaggagataatgtgaggaaaagaggaagt 30858705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 45053324 - 45053362
Alignment:
Q  13 agagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45053324 agagtgggaggagaaaatgtgaggaaaagaggaagtatg 45053362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22605692 - 22605650
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagag 43  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  22605692 aaagagggggagagagtgggaggagataatgtgaggaaaagag 22605650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1218043 - 1217993
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1218043 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 1217993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4759040 - 4759090
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4759040 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 4759090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5912951 - 5913001
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  5912951 aaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatg 5913001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 9039913 - 9039867
Alignment:
Q  5 agggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  9039913 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 9039867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4322948 - 4322898
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  4322948 aaagagggggagagtgtgggaggagaaaatgtgaggaaaagaggaggtatg 4322898  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15739541 - 15739591
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  15739541 aaagaaggggagagagtgagaggagaaaatgtgaggaaaagaggaagtatg 15739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35161857 - 35161807
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  35161857 aaagatggggagagagtgggaggagaaaatgcgaggaaaagaggaagtatg 35161807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42182915 - 42182869
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaag 47  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  42182915 aaagagggggggagagtgggaggagaaaatgtgaggaaaagaggaag 42182869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40144618 - 40144668
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40144618 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 40144668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3742204 - 3742252
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagta 49  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3742204 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagta 3742252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37450252 - 37450202
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  37450252 aaagagggggagagagtgagaggagaaaatgtgaggaaaaaaggaagtatg 37450202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 4034992 - 4035037
Alignment:
Q  6 gggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  4034992 gggggagagagtgggaggagaaaatgtgaggaaaagaagaagtatg 4035037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33803173 - 33803126
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||    
T  33803173 aaagagggggagagtgtgggaggagataatgtgaggaaaagaggaagt 33803126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14678555 - 14678506
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  14678555 aaagagggggagagagtgggaggagaaaatgtgaag-aaagaggaagtatg 14678506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 30362562 - 30362611
Alignment:
Q  2 aagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||||||| |||||| ||||||| ||||||||||| | ||||||||||    
T  30362562 aagagggggagagagtgcgaggagataatgtgaggaatataggaagtatg 30362611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2786962 - 2786912
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2786962 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 2786912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8688334 - 8688284
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8688334 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 8688284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7662039 - 7662089
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  7662039 aaagagggggagagagtgggaggagaaaatgtgaggaaaagagggagtatg 7662089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34954278 - 34954228
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  34954278 aaagagggggagagagtgggaggagaaaatgtgagaaaaagaggaagtatg 34954228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12144298 - 12144248
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  12144298 aaagagggggacagagtgggaggagaaaatgtgagaaaaagatgaagtatg 12144248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43147274 - 43147324
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  43147274 aaagagggggagagattgggaggagataatgtgaggaaaagaggaagtatg 43147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 18171973 - 18172021
Alignment:
Q  3 agagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||||||    
T  18171973 agagggggggagagtgggaggagaaaatgtgaggaaaagagaaagtatg 18172021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40033835 - 40033885
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||  |||||||||||||| ||||||||||||||| ||||||||    
T  40033835 aaagagggggggagagtgggaggagataatgtgaggaaaagatgaagtatg 40033885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 1081744 - 1081773
Alignment:
Q  22 ggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||||||||||||||||||||||    
T  1081744 ggagaaaatgtgaggaaaagaggaagtatg 1081773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42119226 - 42119176
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42119226 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 42119176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 779282 - 779331
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtat 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  779282 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtat 779331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33985286 - 33985334
Alignment:
Q  3 agagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33985286 agagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 33985334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 51243061 - 51243013
Alignment:
Q  3 agagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51243061 agagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51243013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36046741 - 36046791
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  36046741 aaagagtgggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 36046791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54808839 - 54808889
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  54808839 aaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatg 54808889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9242740 - 9242787
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  9242740 aaagagggggagagagtgggaggagataatgtgaggaaaagaggaagt 9242787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 45042853 - 45042899
Alignment:
Q  10 gaaagagtgggaggagaaaatgtgaggaaaagaggaagtatgcgagc 56  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  45042853 gaaagagggggaggagaaaatgtgaggaaaagaggaagtatgtgagc 45042899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47020316 - 47020266
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  47020316 aaagagggggagagagtgggaggagaaaatgtgagaataagaggaagtatg 47020266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52032533 - 52032583
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| ||||    
T  52032533 aaagagagggagagagtgggaggagaaaatgtgaggaaaagaggaattatg 52032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 54703888 - 54703838
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  54703888 aaagagggggagagagtgggaggagagaatgtgaggaaaagaggaaatatg 54703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 43502165 - 43502209
Alignment:
Q  7 ggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  43502165 ggggagagagtgggaggagaaaatgtgaggaaaataggaagtatg 43502209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34939194 - 34939244
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  34939194 aaagagggggagagagtgggagaagaaaatgtgaggataagaggaggtatg 34939244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 37694356 - 37694395
Alignment:
Q  12 aagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  37694356 aagagggggaggagataatgtgaggaaaagaggaagtatg 37694395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6728870 - 6728820
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6728870 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 6728820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21084019 - 21083969
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21084019 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 21083969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41192218 - 41192268
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41192218 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 41192268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1888170 - 1888120
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  1888170 aaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatg 1888120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5290534 - 5290584
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  5290534 aaagagggggagagagttggaggagaaaatgtgaggaaaagaggaagtatg 5290584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5814370 - 5814420
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  5814370 aaagagggggagagagtgggaggagaaaatgtgaggaaaagaggatgtatg 5814420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26257610 - 26257660
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  26257610 aaagcgggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 26257660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32737707 - 32737757
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32737707 aaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatg 32737757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35151364 - 35151414
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35151364 aaagagggggcgagagtgggaggagaaaatgtgaggaaaagaggaagtatg 35151414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40642696 - 40642646
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  40642696 aaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatg 40642646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37057464 - 37057415
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtat 50  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37057464 aaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtat 37057415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 34619739 - 34619786
Alignment:
Q  4 gagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  34619739 gagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatg 34619786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4616479 - 4616529
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  4616479 aaagagggggagagagttggaggagaaaatgtaaggaaaagaggaagtatg 4616529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2195001 - 2195051
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||| |||| |||||||||||||| |||||| ||||||||| |||||||    
T  2195001 aaagagagggagagagtgggaggagataatgtgcggaaaagagaaagtatg 2195051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 37891980 - 37891931
Alignment:
Q  2 aagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    |||||||||  |||||||||||||| ||||||||||| | ||||||||||    
T  37891980 aagagggggggagagtgggaggagataatgtgaggaatataggaagtatg 37891931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6903543 - 6903587
Alignment:
Q  1 aaagagggggaaagagtggga-ggagaaaatgtgaggaaaagagg 44  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6903543 aaagagggggagagagtgggaaggagataatgtgaggaaaagagg 6903587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20345 - 20295
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  20345 aaagaggggaagagagtgggaggagaaaatgtgaggaaaagaggaagtatg 20295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4269 - 4222
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  4269 aaagagggggagagagtgggaggagataatgtgaggaaaagaggaagt 4222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2419625 - 2419672
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagt 48  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  2419625 aaagagggggagagagtgggaggagataatgtgaggaaaagaggaagt 2419672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3514517 - 3514567
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  3514517 aaagacggggagagagtgggaggagaaaatgtcaggaaaagaggaagtatg 3514567  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 30633963 - 30634000
Alignment:
Q  14 gagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30633963 gagtgggaggagaaaatgtgaggaaaagaggaagtatg 30634000  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 11599253 - 11599215
Alignment:
Q  13 agagtgggaggagaaaatgtgaggaaaagaggaagtatg 51  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  11599253 agagtgggatgagaaaatgtgaggaaaagaggaagtatg 11599215  T

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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25860 - 25815
Alignment:
Q  1 aaagagggggaaagagtgggaggagaaaatgtgaggaaaagaggaa 46  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||    
T  25860 aaagagggggagagagtgggaggagataatatgaggaaaagaggaa 25815  T

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