View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_65 (Length: 212)
Name: NF3083_low_65
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 44541592 - 44541407
Alignment:
| Q |
20 |
tcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacagcttgaatcacacaaagtgctcccaacattttattctct |
119 |
Q |
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| T |
44541592 |
tcacctaccacaagctgcctaaattgcaagatcaaaccaactatggata-tcatttcaacagcttgaatcacacaaagtgctcctaacattttattctct |
44541494 |
T |
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| Q |
120 |
ctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtctgtgctcct |
205 |
Q |
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| T |
44541493 |
ctttccatatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattgattttagtttgtgttcct |
44541407 |
T |
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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 472928 - 472748
Alignment:
| Q |
20 |
tcacccaccacaagctgcctaaattgcaggatcaaaccaactatggataatcatttcaacag-cttgaatcacacaaagtgctcccaacattttattctc |
118 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||| || || |||||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
472928 |
tcacccaccaccagctgcctaaattgcaagatcaaaccaactatgaat-attatttcaacagccttgaatcacac--agtgctctcaacattttattctc |
472832 |
T |
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| Q |
119 |
tctttccatannnnnnnaattcaagtttcagtgacaaatgggtcacta-ttttctctaaattgaccattgattttagtctgtgctcct |
205 |
Q |
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||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||| |
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| T |
472831 |
tct----atatttttttaattcaagtttcagtgacaaatgggtcactatttttctctaaattgaccattaattttagtttgtgttcct |
472748 |
T |
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