View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_67 (Length: 205)
Name: NF3083_low_67
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 32203528 - 32203338
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203528 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
32203429 |
T |
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| Q |
101 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
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| T |
32203428 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
32203338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 40454119 - 40454309
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40454119 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
40454218 |
T |
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| Q |
101 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
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| T |
40454219 |
tctctacatcatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
40454309 |
T |
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Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 39745305 - 39745115
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
100 |
Q |
| |
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||||||||||| ||||| ||||| ||||| ||| |||| |||| |||||||| || |||||||| || ||||| || ||||||||||| || |||| |
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| T |
39745305 |
cctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatcc |
39745206 |
T |
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| Q |
101 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
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|||| |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||| || || || || ||||||||||| |
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| T |
39745205 |
tctcaacaacatccatatgaggcttgcgtggatcatgcataaattgactaacaacatttactgcataggtaatatcaggacgtgtatgaga |
39745115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27514397 - 27514587
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
100 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||| |||| |||| |||||||| || |||||||| || ||||| || ||||||||||| || |||| |
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| T |
27514397 |
cctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatcc |
27514496 |
T |
|
| Q |
101 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
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|||| |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||| || || || || ||||||||||| |
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| T |
27514497 |
tctcaacaacatccatatgaggcttgcgtggatcatgcataaattgactaacaacatttactgcataggtaatatcaggacgtgtatgaga |
27514587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9717832 - 9718022
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctcaagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcc |
100 |
Q |
| |
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||||||||||| ||||| ||||| ||||| ||| |||| |||| |||||||| || |||||||| | ||||| || ||||||||||| || |||| |
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| T |
9717832 |
cctgcccaatcagcatcggtgtacccttcaacctctaagtttccatgatttgagaataaaattccttttctaggagtagacttcaaatatctcaaaatcc |
9717931 |
T |
|
| Q |
101 |
tctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
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|||| ||| |||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||| || || || || ||||||||||| |
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| T |
9717932 |
tctcaacagcatccatatgaggcttgcgtggatcatgcataaattgactaacaacatttactgcataggtaatatcaggacgtgtatgaga |
9718022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 56390154 - 56390344
Alignment:
| Q |
1 |
cctgcccaatcggcatctgtgtatccttctaccctc-aagtgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatc |
99 |
Q |
| |
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||||||||||| ||||| ||||| |||| || |||| |||| |||| |||||||| || |||||||| || ||||| || ||||||||||| || ||| |
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| T |
56390154 |
cctgcccaatcagcatcggtgtaccctt-taacctctaagtttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatc |
56390252 |
T |
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| Q |
100 |
ctctctacaacatccatatgaggcttacgcggatcatgcataaactgactcacaacattcactgcataagtgatgtctggtcgtgtatgaga |
191 |
Q |
| |
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||||| |||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||| || || || || ||||||||||| |
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| T |
56390253 |
ctctcaacaacatccatatgaggcttgcgtggatcatgcataaattgactaacaacatttactgcataggtaatatcaggacgtgtatgaga |
56390344 |
T |
|
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