View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3083_low_69 (Length: 202)

Name: NF3083_low_69
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3083_low_69
NF3083_low_69
[»] chr3 (18 HSPs)
chr3 (1-202)||(26646695-26646896)
chr3 (3-199)||(19848675-19848871)
chr3 (11-199)||(19818245-19818433)
chr3 (3-199)||(20036840-20037036)
chr3 (3-199)||(19955763-19955959)
chr3 (3-199)||(19950812-19951008)
chr3 (3-199)||(19838072-19838268)
chr3 (15-199)||(19811968-19812152)
chr3 (15-202)||(19853197-19853384)
chr3 (15-202)||(19989207-19989394)
chr3 (3-199)||(20016433-20016629)
chr3 (8-134)||(20005224-20005350)
chr3 (15-202)||(19857755-19857943)
chr3 (15-202)||(20045808-20045995)
chr3 (18-113)||(24840223-24840318)
chr3 (18-134)||(19943472-19943588)
chr3 (18-104)||(26651816-26651902)
chr3 (23-60)||(17114717-17114754)
[»] chr5 (3 HSPs)
chr5 (19-151)||(38435381-38435513)
chr5 (9-199)||(9814725-9814915)
chr5 (3-202)||(26355161-26355360)
[»] chr1 (1 HSPs)
chr1 (3-133)||(1716968-1717098)
[»] chr8 (1 HSPs)
chr8 (3-129)||(22652322-22652448)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26646896 - 26646695
Alignment:
Q  1 ccccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccattt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646896 ccccaataataggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccattt 26646797  T
Q  101 ctcaacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatat 200  Q
    |||||| |||||| ||| ||||| ||||||||||||||||  |||  | ||| |||| ||  | |||||||| ||||||||||||||||| | |||||||    
T  26646796 ctcaactaccccatatagcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaactttcttccacactgtttcatat 26646697  T
Q  201 tt 202  Q
    ||    
T  26646696 tt 26646695  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 19848871 - 19848675
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    |||| ||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||| | |  |||||||||||    
T  19848871 ccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtattaggacaccatttct 19848772  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    |||| ||||||| || |||||| |||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19848771 caactaccccaactagcaagttttgatttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccacacagattcata 19848675  T

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Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 19818433 - 19818245
Alignment:
Q  11 aggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaacc 110  Q
    |||||||||||||||||| |||| |||||||||||| |||||||| |||||||| | ||  |||||||| || |||||||||||||||||||||||||||    
T  19818433 aggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaacc 19818334  T
Q  111 ccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    ||||||| |||||| ||||||||||| ||||||||||||||   ||||||| |||||||||||| | ||||||||||||||||||||||    
T  19818333 ccaaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttccacacagattcata 19818245  T

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Target: chr3; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 20036840 - 20037036
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    |||| |||||||||||| || | ||||||||||||||||||| | |  |||||||||||||||| || |||||| ||||||||||   ||||||||||||    
T  20036840 ccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtcttggaacaccatttct 20036939  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    | ||||||||| ||| |||||| |||| |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20036940 ccacaaccccatatagcaagttttgatctttatgtatgtaacacttagtggccataatagcatcaaagattccaactttcttccacacagattcata 20037036  T

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Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 19955959 - 19955763
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||||| || ||||| |||||||| | || |||||| |||||||||||||||||||||||||    
T  19955959 ccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctcacaacaccatttct 19955860  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    ||||||| ||||||| |||||| | ||||||||| ||||||||||||||   ||| ||| |||||||||||||||||||| |||| |||||||||||    
T  19955859 caacaactccaaatagcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaaacagattcata 19955763  T

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Target: chr3; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 19951008 - 19950812
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    |||| |||||| ||||||||||||||||| | |||||||||||| |||||||| |||||||| | || |||||| ||||| ||||||  |||||||||||    
T  19951008 ccaagaacagggtaaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctcagtacaccatttct 19950909  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    ||||||||||||| | |||||||||||||||||||||   || ||||||   ||||||| |||||||||||||| ||||||||||||||||||||||    
T  19950908 caacaaccccaaaaagcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttccacacagattcata 19950812  T

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Target: chr3; HSP #7
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 19838268 - 19838072
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||||| || ||||| |||||||| | || |||||| ||||| |||||||| ||||||||||    
T  19838268 ccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcaccatttct 19838169  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    |||||||  ||||||||||||| | ||||||||| ||||||||||||||   ||| ||| |||||||||||||||||||| |||| |||||||||||    
T  19838168 caacaacttcaaataacaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaaacagattcata 19838072  T

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Target: chr3; HSP #8
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 19812152 - 19811968
Alignment:
Q  15 taaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaa 114  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||  |||||||| || |||||||||||||||||||||||||||||||    
T  19812152 taaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacaccatttctcaacaaccccaa 19812053  T
Q  115 ataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    | | ||| ||  |||||||  ||||||  || || ||   ||||||| |||||||||||| | |||||||||||| |||||||||    
T  19812052 agagcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaaagattcata 19811968  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 19853384 - 19853197
Alignment:
Q  15 taaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaa 114  Q
    ||||||||||||||||| | |||||||||||| || |||||||||||||| |  | |||||| ||||| |||||| |||||||||| ||||||||||||     
T  19853384 taaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctcagaacaccatttgtcaacaaccccac 19853285  T
Q  115 ataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatattt 202  Q
    |||||||||| |||| ||| | |||| |||  |||||   ||||||| ||||||||||||||||||||||||| |  |||||||||||    
T  19853284 ataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttccatagtgattcatattt 19853197  T

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Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 19989394 - 19989207
Alignment:
Q  15 taaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaa 114  Q
    |||||||| |||||||| | ||| |||||||| |||||||| |||||||| | ||  ||||| || ||||||||||||||||||||||||||||||||||    
T  19989394 taaccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacaccatttctcaacaaccccaa 19989295  T
Q  115 ataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatattt 202  Q
    ||| ||||||||||| ||| | |||| | || || ||   ||||||| | |||||||| |||||||||||||||||| ||||| ||||    
T  19989294 atagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttccacacatattcaaattt 19989207  T

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Target: chr3; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 20016433 - 20016629
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||| || || |||||| |||| | || |||||| |||||||||| | ||||||||||||    
T  20016433 ccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttct 20016532  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    |  ||||| || ||| |||||| |||||| |  |||||   || || |||  ||||||| |||||||||||||||| | ||||||||||||||||||    
T  20016533 ccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacacagattcata 20016629  T

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Target: chr3; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 20005224 - 20005350
Alignment:
Q  8 aacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaaca 107  Q
    ||||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||   || ||||||||| ||||| |||||||||||||||||||||    
T  20005224 aacaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaaca 20005323  T
Q  108 accccaaataacaagttatgattttta 134  Q
    | |||| | | |||||  |||||||||    
T  20005324 atcccacaaaccaagtcttgattttta 20005350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 19857943 - 19857755
Alignment:
Q  15 taaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatt-tgtctcacaacaccatttctcaacaacccca 113  Q
    ||||||||||||||||  | |||||| | |||||| |||||||||||||||| || ||| || |||||  |||||| |||||||||| ||||||||||||    
T  19857943 taaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtctcagaacaccatttgtcaacaacccca 19857844  T
Q  114 aataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatattt 202  Q
     | | ||||||  ||| |||   ||||  |||||||||   | ||||| ||||||| ||| || |||||||||||||||||||||||||    
T  19857843 taaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttccacacagattcatattt 19857755  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 20045995 - 20045808
Alignment:
Q  15 taaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaa 114  Q
    ||||| |||||||| |||||||||||||| || || ||||  |||||||||| ||  | ||| |||||||| ||||||||||||||||| ||||||||      
T  20045995 taacctcccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatcacaacaccatttctccacaacccctt 20045896  T
Q  115 ataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatattt 202  Q
     ||  ||||| ||||||||| | ||| | || || | |  ||||||| | |||||||||||||||| ||||||||| |||||| ||||    
T  20045895 gtagtaagttctgatttttaagaatgcaacactttgagttcataatagcttcaaagattccaacttccttccacaccgattcaaattt 20045808  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 24840223 - 24840318
Alignment:
Q  18 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaacccca 113  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||   || ||| ||||| ||||| |||||||||||||||||||||||||||    
T  24840223 ccccccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctcaacaacccca 24840318  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 19943588 - 19943472
Alignment:
Q  18 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaaata 117  Q
    ||||||||||| |||| ||| |||||||| || ||||||||||||||   || ||||||||| ||||| |||||||||||||||||||||| |||| | |    
T  19943588 ccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctcaacaatcccacaaa 19943489  T
Q  118 acaagttatgattttta 134  Q
     |||||  |||||||||    
T  19943488 ccaagtcttgattttta 19943472  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26651902 - 26651816
Alignment:
Q  18 ccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctca 104  Q
    ||||||||||| |||| |||||||||||| || ||||| |||||||| | ||  ||||||  ||||||||||| |||||||||||||    
T  26651902 ccccccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctca 26651816  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 17114754 - 17114717
Alignment:
Q  23 caaaaccatgatatcctccaaagtaatagttgcttcac 60  Q
    |||||||||||||||||||||||| || ||||||||||    
T  17114754 caaaaccatgatatcctccaaagttatggttgcttcac 17114717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 38435381 - 38435513
Alignment:
Q  19 cccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaaccccaaataa 118  Q
    ||||||||||||||||||| || ||||| || |||||| ||||||  | || |||||| ||||| |||| ||||||||||||||||||||||| ||||||    
T  38435381 cccccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctcaacaaccctaaataa 38435480  T
Q  119 caagttatgatttttatgtatgtagcatttagt 151  Q
    |||||||||||||||||||||||||||||||||    
T  38435481 caagttatgatttttatgtatgtagcatttagt 38435513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 9814915 - 9814725
Alignment:
Q  9 acaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttctcaacaa 108  Q
    ||||||||||||||||||||||| | |||||||||| |||| || || |||||||| | || |||||| ||||| |||| ||||||||||||||||||||    
T  9814915 acaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacaccatttctcaacaa 9814816  T
Q  109 ccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcata 199  Q
    ||||| ||| |||||| |||| |||   ||||  ||| || ||   ||| ||| |||||||||| || ||||||||||||| |||||||||    
T  9814815 ccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttccacaaagattcata 9814725  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 26355161 - 26355360
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    ||||| ||||| |||||||| | |||||| | ||||||||||   |  || || |||||||| | || |||||| ||||| |||||||||||||||||||    
T  26355161 ccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacaccatttct 26355260  T
Q  103 caacaaccccaaataacaagttatgatttttatgtatgtagcatttagtggccataataccatcaaagattccaactttcttccacacagattcatattt 202  Q
    | ||||||||  | | |||||| ||||||||  |||||  |||||| ||   ||| ||| ||||||| || ||| |||||||||| || | |||||||||    
T  26355261 ccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagctttcttccaaaccggttcatattt 26355360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 1717098 - 1716968
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    ||||| ||||| ||| |||| |||||||| |||||||||||||| || || ||||||||||| | || |||||| ||||||||||||||||||||||| |    
T  1717098 ccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacaccattttt 1716999  T
Q  103 caacaaccccaaataacaagttatgattttt 133  Q
    |||||| |||| |||||||||| ||||||||    
T  1716998 caacaatcccatataacaagttttgattttt 1716968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 22652322 - 22652448
Alignment:
Q  3 ccaataacaggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtatttgtctcacaacaccatttct 102  Q
    |||| |||||| |||||| | |||| ||| | ||| || || || |||||||| |||||||| | || |||||| |  ||||||||||| ||||||||||    
T  22652322 ccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagtttgtctcacagcaccatttct 22652421  T
Q  103 caacaaccccaaataacaagttatgat 129  Q
    ||||||||||||||| |||||||||||    
T  22652422 caacaaccccaaatagcaagttatgat 22652448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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