View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3083_low_7 (Length: 485)
Name: NF3083_low_7
Description: NF3083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3083_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 305 - 467
Target Start/End: Complemental strand, 38612044 - 38611882
Alignment:
| Q |
305 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
404 |
Q |
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| T |
38612044 |
cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg |
38611945 |
T |
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| Q |
405 |
ttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaac |
467 |
Q |
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| T |
38611944 |
gtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaac |
38611882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 38613614 - 38613476
Alignment:
| Q |
1 |
gatggccaaacttgctacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttcctgaatttgttgg |
100 |
Q |
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| T |
38613614 |
gatggccaaacttgttacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttcctgaatttgttgg |
38613515 |
T |
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| Q |
101 |
caaagcaaaggagctctgtgaaatatttagtaagaatta |
139 |
Q |
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| T |
38613514 |
caaagcaaaggagctctgtggaatatttagtaagaatta |
38613476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 38612218 - 38612088
Alignment:
| Q |
131 |
taagaattaacatcagatcattttctaaacaggaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta |
230 |
Q |
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| T |
38612218 |
taagaattaacatcagatcattttctaaacagaaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta |
38612119 |
T |
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| Q |
231 |
atttaaaagtgaggtgcaaatgtaagggcgt |
261 |
Q |
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| T |
38612118 |
atttaaaagtgaggtgcaaatgtaagggcgt |
38612088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 14667294 - 14667244
Alignment:
| Q |
185 |
aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta |
235 |
Q |
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| T |
14667294 |
aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta |
14667244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 1012544 - 1012494
Alignment:
| Q |
185 |
aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta |
235 |
Q |
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| T |
1012544 |
aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta |
1012494 |
T |
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