View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3084_high_1 (Length: 1310)
Name: NF3084_high_1
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 878; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 878; E-Value: 0
Query Start/End: Original strand, 1 - 1084
Target Start/End: Complemental strand, 5052535 - 5051458
Alignment:
| Q |
1 |
aaagtgaccaaatcatctctcctaggttaatgtaacaccatggaatgaaacaggcagcctggcaggtaccaagaacaatagagtaaccaaaaacaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5052535 |
aaagtgaccaaatcatctctcctaggttaatgtaacaccatggaatgaaacaggcagcctggcaggtaccaagaacaatagagtaaccaaaaacaaaata |
5052436 |
T |
|
| Q |
101 |
aagtgattcctccattgctggatggttgaacatggagaaacttgatcacgaaattttactccattgcacatcacagaagtgaagggcatccctgttatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5052435 |
aagtgattcctccattgctggatggttgaacatggagaaacttgatcacgaaattttactccattg---------------aagggcatccctgttatag |
5052351 |
T |
|
| Q |
201 |
caccgtgcaaatttgatattaactactatatttgaaatccatattgtatattataatcaannnnnnnaacattgactagttaagtcaatgcaaaacatta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
5052350 |
caccgtgcaaatttgatattaactactatatttgaaagccatattgtatattataatcaaattttttaacattgactagttaagtcaatgcaaagcatta |
5052251 |
T |
|
| Q |
301 |
aaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtactattgtcttcaatgttcactgaatattccaatcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
5052250 |
aaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatctgaaaccaaggtactattgtcttaaatgttcactgaat-ttccaatcc |
5052152 |
T |
|
| Q |
401 |
aaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaacatggcagtaagtaaagggaatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5052151 |
aaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaacatggcagtaagtaaagggaatg |
5052052 |
T |
|
| Q |
501 |
agggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgattggggccgggatcaatcaagtcagcaataatacat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
5052051 |
agggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgatcggggccgggatcaatcaagtcagcaacaatacat |
5051952 |
T |
|
| Q |
601 |
aatttaacagttgggcaaagggctatcataattgttcaactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacatacaa |
700 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5051951 |
aatttgacagttgggcaaagggctatcataattgttcaactaagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacatacaa |
5051852 |
T |
|
| Q |
701 |
tctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgca |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5051851 |
tctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgca |
5051752 |
T |
|
| Q |
801 |
aatccatcgcaaagcgcttct------taatctcacagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatga---a |
891 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
5051751 |
aatccatcgcaaagcgcttcttagcaataatctcacagctccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaaga |
5051652 |
T |
|
| Q |
892 |
agaagaaaaccagaaaagtagcacttcaattttatctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaa |
991 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5051651 |
agaagaaaaccagaaaagtagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaa |
5051552 |
T |
|
| Q |
992 |
tttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaattgttggattttca |
1084 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051551 |
tttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttggattttca |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 1140 - 1299
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
1140 |
acatcctcacaaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
1239 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
1240 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
1299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 5048602 - 5048513
Alignment:
| Q |
134 |
ggagaaacttgatcacgaaattttactccattgcacatcacagaagtgaagggcatccctgttatatcaccgtgcaaatttgatattaact |
224 |
Q |
| |
|
|||||||||||||||| ||| || |||| || |||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |
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|
| T |
5048602 |
ggagaaacttgatcacaaaacttaactctatcgcacatcacaaaagtgaagggcatccctatt-taggaccgtgcaaatttgatattaact |
5048513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 5048273 - 5048194
Alignment:
| Q |
287 |
aatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtac |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | | |||| || | ||||||||||||| ||||||| |
|
|
| T |
5048273 |
aatgcaaagcattaaaacatatccaaatttgatgagatcatgaccaagtcagaacagtcaaacatttgaaactaaggtac |
5048194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 637 - 1299
Target Start/End: Original strand, 51273452 - 51274120
Alignment:
| Q |
637 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggaga |
735 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggaga |
51273551 |
T |
|
| Q |
736 |
acttatcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctc |
828 |
Q |
| |
|
| |||||||||||| ||| ||| ||||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||| |||||| ||||| |
|
|
| T |
51273552 |
atttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctc |
51273651 |
T |
|
| Q |
829 |
acagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaa---gaaaaccagaaaag-tagcacttcaatttt |
924 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
51273652 |
acagctccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaatttt |
51273748 |
T |
|
| Q |
925 |
atctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacc |
1024 |
Q |
| |
|
|||||||||| |||||| ||| | ||||| ||| | |||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| | |
|
|
| T |
51273749 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
51273848 |
T |
|
| Q |
1025 |
ttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtag |
1122 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
51273849 |
ctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtag |
51273948 |
T |
|
| Q |
1123 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcga |
1222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||| ||||||| || |
|
|
| T |
51273949 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactaga |
51274047 |
T |
|
| Q |
1223 |
aggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
1299 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
51274048 |
aggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 4e-57
Query Start/End: Original strand, 949 - 1180
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
949 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
1048 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| ||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
|
| Q |
1049 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
1146 |
Q |
| |
|
|| | || ||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||| || | |||||||||||||||| ||||||||||| |
|
|
| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
|
| Q |
1147 |
cacaaaagattggatcaaacttccactccctcca |
1180 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |
|
|
| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 706 - 823
Target Start/End: Original strand, 14907599 - 14907717
Alignment:
| Q |
706 |
tagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatc |
804 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||| ||||| | ||||||| ||| |||||| | |||||| |
|
|
| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
805 |
catcgcaaagcgcttctta |
823 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
14907699 |
catctcaaagcgcatctta |
14907717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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