View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3084_high_12 (Length: 315)

Name: NF3084_high_12
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3084_high_12
NF3084_high_12
[»] chr4 (2 HSPs)
chr4 (25-127)||(8569817-8569920)
chr4 (25-127)||(54189293-54189395)
[»] chr3 (1 HSPs)
chr3 (25-127)||(28695778-28695881)
[»] chr7 (2 HSPs)
chr7 (65-128)||(24511458-24511521)
chr7 (65-127)||(25035900-25035962)
[»] chr5 (2 HSPs)
chr5 (74-126)||(17039399-17039451)
chr5 (65-127)||(14417581-14417644)
[»] chr8 (1 HSPs)
chr8 (248-293)||(29387216-29387261)
[»] chr1 (1 HSPs)
chr1 (74-121)||(43532021-43532068)
[»] scaffold0957 (1 HSPs)
scaffold0957 (85-127)||(3070-3112)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 8569920 - 8569817
Alignment:
Q  25 aaatgttatttttataatattgaaaa-taattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagt 123  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8569920 aaatgttatttttataatattgaaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagt 8569821  T
Q  124 agtg 127  Q
    ||||    
T  8569820 agtg 8569817  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 54189293 - 54189395
Alignment:
Q  25 aaatgttatttttataatattgaaaataattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagta 124  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  54189293 aaatattatttttataatattgaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggttatatgtgtcgta 54189392  T
Q  125 gtg 127  Q
    |||    
T  54189393 gtg 54189395  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 28695881 - 28695778
Alignment:
Q  25 aaatgttatttttataatattgaaaa-taattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagt 123  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28695881 aaatgttatttttataatattgaaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagt 28695782  T
Q  124 agtg 127  Q
    ||||    
T  28695781 agtg 28695778  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 24511458 - 24511521
Alignment:
Q  65 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtgc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24511458 atgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtagtagtgc 24511521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 25035900 - 25035962
Alignment:
Q  65 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 127  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  25035900 atgtaacactttctaaaaaatgtcacatataagatgttgcaaaaagtcatatgcgtagtagtg 25035962  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 17039399 - 17039451
Alignment:
Q  74 tttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagt 126  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17039399 tttttaaaatatgtcacatataagatgttgcaaaaggtcatatgtgtagtagt 17039451  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 14417581 - 14417644
Alignment:
Q  65 atgtaacactttttaaaa-aatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 127  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  14417581 atgtaacactttttaaaaaaatgtcacataaaagatgttgcaaaacttcatatgtgtagtagtg 14417644  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 29387216 - 29387261
Alignment:
Q  248 gttaacatatctatatttcttttgcaaatttattaaatgatttcta 293  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  29387216 gttaacatatctatatttcttttccaagtttattaaatgatttcta 29387261  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 43532021 - 43532068
Alignment:
Q  74 tttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgta 121  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||    
T  43532021 tttttataaaatgtcacatataagatgttgcaaaaagtcatacgtgta 43532068  T

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Target: scaffold0957 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 3112 - 3070
Alignment:
Q  85 tgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 127  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  3112 tgtcacatataagatgttgcaaaatgtcttatgtgtagtagtg 3070  T

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