View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3084_high_13 (Length: 306)

Name: NF3084_high_13
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3084_high_13
NF3084_high_13
[»] chr2 (1 HSPs)
chr2 (24-306)||(41234093-41234376)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 41234376 - 41234093
Alignment:
Q  24 tttcttagcaattaaggaaatatattgaagttaggaaatagatagaactattgattagtcnnnnnnnnngttgggaaatacagtcaacaaaagatataga 123  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  41234376 tttcttagcaattaaggaaatatattaaagttaggaaatagatagaactattgattagtcaaaaaaaa-gttgggaaatacagtcaacaaaagatataga 41234278  T
Q  124 tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41234277 tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc 41234178  T
Q  224 ccctacaaaatctctaattggccac----tctcattaaggtttataagnnnnnnnnnnaagtggattatatatattttttaatcatt 306  Q
    |||||||||||||||||||||||||    |||||||||||||||||||          |||||||||||||||||||||||||||||    
T  41234177 ccctacaaaatctctaattggccactctctctcattaaggtttataag--ttttttttaagtggattatatatattttttaatcatt 41234093  T

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