View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_high_24 (Length: 227)
Name: NF3084_high_24
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_high_24 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 7375595 - 7375757
Alignment:
| Q |
65 |
gaggcaccacagggtgcaaattgacgtgttcctcggccttgtaaagtaaaacggtggtttcatcgaacaatttgttaatgtgattcttcaggacttgacg |
164 |
Q |
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| T |
7375595 |
gaggcaccacagggtgcaaattgacgtgttcctcggccttgtaaagtagaacggtgatttcatcgaacaatttgttaatgtgattcttcaggacttgacg |
7375694 |
T |
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| Q |
165 |
atcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcagaagattgcttgcgtc |
227 |
Q |
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| T |
7375695 |
atcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcagaagattgcttgcgtc |
7375757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 7323232 - 7323321
Alignment:
| Q |
134 |
atttgttaatgtgattcttcaggacttgacgatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcagaagattgcttg |
223 |
Q |
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| T |
7323232 |
attttttaatgtgattcttcgcgaattgaggatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtattgcttg |
7323321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 7370891 - 7370949
Alignment:
| Q |
165 |
atcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcagaagattgcttg |
223 |
Q |
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| T |
7370891 |
atcaagaactagcgaattccacaacttgcaaacacacctcaattgcagagtattgcttg |
7370949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 7332778 - 7332827
Alignment:
| Q |
164 |
gatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcaga |
213 |
Q |
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| T |
7332778 |
gatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcaga |
7332827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 6828793 - 6828694
Alignment:
| Q |
114 |
aacggtggtttcatcgaacaatttgttaatgtgattcttcaggacttgacgatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcaga |
213 |
Q |
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| T |
6828793 |
aacggtgatatcattgagcaatttgaaaaggtgattcttcacgaattgagaatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcaga |
6828694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 39576892 - 39576970
Alignment:
| Q |
141 |
aatgtgattcttcaggacttgacgatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcagaagattg |
219 |
Q |
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| T |
39576892 |
aatgtgattctccatgaattgaggatcaacaaggagcgacttccacaacttgcaaacacaccttaattgtagaggattg |
39576970 |
T |
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