View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_high_6 (Length: 537)
Name: NF3084_high_6
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 54 - 527
Target Start/End: Original strand, 3428650 - 3429124
Alignment:
| Q |
54 |
agttatgctcatattacaaa-tctagttatgcttttcgagacaagcgaaaaattagagcacattcaagaagaagatgcaattggctggtccttgaaatga |
152 |
Q |
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| T |
3428650 |
agttatgctcataataaaaaatctagttatgcttttcgagacaagcgaaaaattagagcacattcaagaagaagatgcaattggctggtccttggaatga |
3428749 |
T |
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| Q |
153 |
gaggaaaactcctaaaattccaatccctatcaccatataaagagaccaaaaagtagtgtaccgaatgatggtagattaaaaataaaaattcttctcataa |
252 |
Q |
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| T |
3428750 |
gaggaaaactcctaaaattccaatccctatcaccatataaagagaccaaaaagtagtgtaccaaatgatggtagattaaaaataaaaattcttctcataa |
3428849 |
T |
|
| Q |
253 |
ctcatgcacacttaatctctaatttcaattctacgcgactaatagcattgatcgcagatatattagattaattcaacgactgagattttgctaacaacgg |
352 |
Q |
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| T |
3428850 |
ctcatccacacttaatctctaatttcaattctacgcgactaataacattgatcgcataaatattagattaattcaacgactgagatttcgctaataacgg |
3428949 |
T |
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| Q |
353 |
aaaaggatccaactatctaccacttgacttggattttctacggctgcaacactatactaacacctaccactagtatctaccacatgattttactaaccaa |
452 |
Q |
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| T |
3428950 |
aaaaggatccaactatctatcacttgacttggattttctacagccgcaacaccatactaacacctaccactagtatctaccacatgattttactaaccaa |
3429049 |
T |
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| Q |
453 |
ctagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtgaagtggaagtagt |
527 |
Q |
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| T |
3429050 |
ctagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcattttcttgtgaagtggaagtagt |
3429124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 526
Target Start/End: Original strand, 3425544 - 3425644
Alignment:
| Q |
429 |
ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaac---cttcattttcttgtgaagtggaagta |
525 |
Q |
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| T |
3425544 |
ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta |
3425643 |
T |
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| Q |
526 |
g |
526 |
Q |
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| T |
3425644 |
g |
3425644 |
T |
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