View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_11 (Length: 393)
Name: NF3084_low_11
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 44661225 - 44660842
Alignment:
| Q |
1 |
tcatacacattcctttgaatcgatggctctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaataggtcattaatat |
100 |
Q |
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| T |
44661225 |
tcatacacattcctttgaatcgatggctctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaatagctcattaatat |
44661126 |
T |
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| Q |
101 |
gattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaaa |
200 |
Q |
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| T |
44661125 |
gattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaaa |
44661026 |
T |
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| Q |
201 |
tgaagaaaaatccaaagcgtgtcttgttcatgtttactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcact |
300 |
Q |
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| T |
44661025 |
tgaagaaaaatccaaagcgtgtcttgttcatgattactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcact |
44660926 |
T |
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| Q |
301 |
cgtatctatttatagaggtagagggagtaaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatgagaataat |
384 |
Q |
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| T |
44660925 |
cgtatctatttatagaggtagagggagtaaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatcagaataat |
44660842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 44650788 - 44650857
Alignment:
| Q |
168 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatgtttac |
237 |
Q |
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| T |
44650788 |
aagacttactagaagcaaggagaataaacaaaatgaataaaaccccaaagcgtgtcttgttcatgattac |
44650857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 44653915 - 44653851
Alignment:
| Q |
168 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatg |
232 |
Q |
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||||||||| | ||| ||| |||||||| | ||||||||||||||||||||| | ||||||||| |
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| T |
44653915 |
aagacttaccaaaagtaagaagaataagtagaatgaagaaaaatccaaagcgagctttgttcatg |
44653851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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