View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_12 (Length: 370)
Name: NF3084_low_12
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 41232314 - 41232184
Alignment:
| Q |
159 |
acgtccaaattgcattggaacacaaaattagtgaacaca----acatataaccaaacgaagcattagtggaatggaatgaattctctcaattgttttcct |
254 |
Q |
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| T |
41232314 |
acgtccaaattgcattggaaaacaaaattagtaaacacatacaacatataaccaaaggaagcattagtggaatggaatgaattctctcaattgttttcct |
41232215 |
T |
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| Q |
255 |
ctgaatcatagtgaattttattattgaatgg |
285 |
Q |
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| T |
41232214 |
ctcaatcatagtcaattttattattgaatgg |
41232184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 41234061 - 41233910
Alignment:
| Q |
1 |
ttatatatattttaggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttggcctgtgtttgtgttgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
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| T |
41234061 |
ttatatatattttaggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttagtttatgtttgt------- |
41233969 |
T |
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| Q |
101 |
gtagaatcacctctaacacgcgttttagctaaagcttaaatatatagtttctaatatcacgtc |
163 |
Q |
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| T |
41233968 |
----tatcaccgctaagatacgtttcagctgaagcttaaatatatagtttctaatatcacgtc |
41233910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 19477652 - 19477754
Alignment:
| Q |
111 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
209 |
Q |
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| T |
19477652 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19477745 |
T |
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| Q |
210 |
acgaagcat |
218 |
Q |
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|| |||||| |
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| T |
19477746 |
acaaagcat |
19477754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 19548577 - 19548679
Alignment:
| Q |
111 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
209 |
Q |
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||||||| ||||||| |||| |||||| ||||||||| || | ||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |
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| T |
19548577 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19548670 |
T |
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| Q |
210 |
acgaagcat |
218 |
Q |
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|| |||||| |
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| T |
19548671 |
acaaagcat |
19548679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 19584111 - 19584009
Alignment:
| Q |
111 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
209 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||| || | ||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |
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| T |
19584111 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19584018 |
T |
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| Q |
210 |
acgaagcat |
218 |
Q |
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|| |||||| |
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| T |
19584017 |
acaaagcat |
19584009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 22710616 - 22710678
Alignment:
| Q |
111 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
172 |
Q |
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||||||| ||||||| |||| |||||| ||||||||| || | |||||||||||||||||||| |
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| T |
22710616 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
22710678 |
T |
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