View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_13 (Length: 340)
Name: NF3084_low_13
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 3428213 - 3428386
Alignment:
| Q |
9 |
gagaagaagagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaat |
108 |
Q |
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| T |
3428213 |
gagaagaagagtgcaaacgtttgaaatgtctctctccatctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaat |
3428312 |
T |
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| Q |
109 |
aaaagaataaaagttgatttataacaacaattctttgagaatttaatgcacaaacatgaacgagctaatgtcaa |
182 |
Q |
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| T |
3428313 |
aaaagaataaaagttgatttataacaataattctttgagaatttaatgcacaaacatgaacgagctaatgtcaa |
3428386 |
T |
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Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 179 - 340
Target Start/End: Original strand, 3428449 - 3428610
Alignment:
| Q |
179 |
tcaatttagtttataaattgtcattctttatctaattttgcctataaattaattatcaattttgtcaaacagtctaatagttaaaatcaaacacgtgaaa |
278 |
Q |
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| T |
3428449 |
tcaatttagtttataaattgtcattttttatctaattttgcctataaattaattatcaattttgtctaacaatctagtagttaaaatcaaacacgtaaaa |
3428548 |
T |
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| Q |
279 |
tcttgagaagtggagaatctcatattcagacctgtgttacgacacatcaaatatttttaaac |
340 |
Q |
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| T |
3428549 |
tcttgagaagcggagaatctcatattcagacctgtgttccgacacatcaaatatctttaaac |
3428610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 3431035 - 3431170
Alignment:
| Q |
48 |
ctcaaggagacaagatgatgtcatgagacaattgaattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataacaacaattctttgag |
147 |
Q |
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| T |
3431035 |
ctcaacgagacaagatgatgtaatgagacaatcgcattgtcaagagtggggatcacaaaataaaagaataaaagttgatttataataataattctttgag |
3431134 |
T |
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| Q |
148 |
aatttaatgcacaaacatgaacgagctaatgtcaat |
183 |
Q |
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| T |
3431135 |
aatataatgcactagcatgaatgaggtaatgtcaat |
3431170 |
T |
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