View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3084_low_16 (Length: 306)

Name: NF3084_low_16
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3084_low_16
NF3084_low_16
[»] chr2 (1 HSPs)
chr2 (24-306)||(41234093-41234376)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 41234376 - 41234093
Alignment:
Q  24 tttcttagcaattaaggaaatatattgaagttaggaaatagatagaactattgattagtcnnnnnnnnngttgggaaatacagtcaacaaaagatataga 123  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  41234376 tttcttagcaattaaggaaatatattaaagttaggaaatagatagaactattgattagtcaaaaaaaa-gttgggaaatacagtcaacaaaagatataga 41234278  T
Q  124 tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41234277 tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc 41234178  T
Q  224 ccctacaaaatctctaattggccac----tctcattaaggtttataagnnnnnnnnnnaagtggattatatatattttttaatcatt 306  Q
    |||||||||||||||||||||||||    |||||||||||||||||||          |||||||||||||||||||||||||||||    
T  41234177 ccctacaaaatctctaattggccactctctctcattaaggtttataag--ttttttttaagtggattatatatattttttaatcatt 41234093  T

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