View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3084_low_19 (Length: 275)

Name: NF3084_low_19
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3084_low_19
NF3084_low_19
[»] chr7 (8 HSPs)
chr7 (36-220)||(32390810-32391004)
chr7 (48-196)||(32389978-32390127)
chr7 (130-165)||(3987253-3987288)
chr7 (77-174)||(24240640-24240739)
chr7 (100-165)||(3346031-3346096)
chr7 (137-193)||(25635000-25635058)
chr7 (107-163)||(41589267-41589324)
chr7 (130-165)||(30480712-30480748)
[»] chr3 (13 HSPs)
chr3 (36-191)||(50381907-50382066)
chr3 (36-196)||(50382661-50382826)
chr3 (78-165)||(31799553-31799641)
chr3 (130-164)||(42078649-42078683)
chr3 (133-187)||(35942156-35942212)
chr3 (130-187)||(28539373-28539432)
chr3 (136-187)||(50838282-50838336)
chr3 (136-187)||(54560091-54560145)
chr3 (136-187)||(1577534-1577587)
chr3 (136-187)||(1576544-1576598)
chr3 (136-187)||(43546424-43546478)
chr3 (136-187)||(47471499-47471553)
chr3 (136-187)||(54560840-54560894)
[»] chr4 (9 HSPs)
chr4 (36-187)||(11147803-11147959)
chr4 (107-187)||(11148089-11148173)
chr4 (136-187)||(31632440-31632492)
chr4 (81-187)||(31633579-31633689)
chr4 (133-187)||(49682052-49682108)
chr4 (136-187)||(620528-620582)
chr4 (136-187)||(621559-621613)
chr4 (130-187)||(21226540-21226599)
chr4 (130-170)||(23102298-23102338)
[»] chr8 (6 HSPs)
chr8 (48-165)||(21190126-21190244)
chr8 (130-187)||(20112293-20112353)
chr8 (80-165)||(26544607-26544695)
chr8 (136-187)||(14790730-14790784)
chr8 (136-165)||(45105526-45105555)
chr8 (136-187)||(14791477-14791531)
[»] scaffold0169 (2 HSPs)
scaffold0169 (80-188)||(27368-27478)
scaffold0169 (36-165)||(26767-26898)
[»] chr5 (9 HSPs)
chr5 (100-192)||(21012396-21012492)
chr5 (136-187)||(5347781-5347835)
chr5 (134-187)||(36681095-36681150)
chr5 (136-187)||(36681874-36681926)
chr5 (136-174)||(7491325-7491363)
chr5 (136-187)||(5348529-5348583)
chr5 (79-165)||(10326808-10326896)
chr5 (136-187)||(31808335-31808389)
chr5 (136-187)||(36429340-36429394)
[»] chr1 (8 HSPs)
chr1 (130-187)||(45575987-45576046)
chr1 (136-187)||(27585348-27585401)
chr1 (130-187)||(36475331-36475391)
chr1 (133-187)||(27586005-27586061)
chr1 (136-187)||(36475994-36476048)
chr1 (136-187)||(47445798-47445852)
chr1 (136-182)||(47445051-47445100)
chr1 (139-191)||(24646463-24646518)
[»] scaffold0020 (1 HSPs)
scaffold0020 (77-181)||(2012-2120)
[»] chr6 (5 HSPs)
chr6 (136-187)||(15347490-15347544)
chr6 (136-187)||(30710302-30710355)
chr6 (135-187)||(15348219-15348274)
chr6 (137-165)||(2953355-2953383)
chr6 (136-187)||(17732839-17732893)
[»] chr2 (5 HSPs)
chr2 (136-187)||(4592685-4592739)
chr2 (130-187)||(33002935-33002994)
chr2 (136-187)||(45114916-45114970)
chr2 (137-182)||(10256514-10256561)
chr2 (137-165)||(22539136-22539164)
[»] scaffold0102 (1 HSPs)
scaffold0102 (136-170)||(33167-33201)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 32390810 - 32391004
Alignment:
Q  36 tcatttaccccc--atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagc-aac 132  Q
    ||||||||||||  |||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||    
T  32390810 tcatttacccccctatgacgtggcataaaattcaaccaatgtggaggtgccacgtgtacatttacttgccacgtcatatggtttaacagtcaaaacaaac 32390909  T
Q  133 gga-gggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaatgtcggggg----ttaacgaatgcttcaatttcgggg 220  Q
    ||| ||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| ||||    || ||||||||| |||||||||||    
T  32390910 ggaggggggtaattgactaacgtttgataatttcaggggatttttgaagtttcttaaatgtcaggggggttttgacgaatgctacaatttcgggg 32391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 32390127 - 32389978
Alignment:
Q  48 atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagac-aaagcaacggagggggtaattg 146  Q
    |||||||| ||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||  | |||  || ||||||| ||||||    
T  32390127 atgacgtagcataaaattcagctaatgtagaggtgtcacgtgtacatttacttgccacgtcatatggtttaacaaccaaaataaatggaggggataattg 32390028  T
Q  147 actaacgtttgacaatttcgggggttttgaagtttcttaaatgtcggggg 196  Q
    ||||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  32390027 actaacgtttgacaatttcaggggttttaaagtttcttaaatatcggggg 32389978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 3987253 - 3987288
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttc 165  Q
    ||||||||||||||||||||||||||||||||||||    
T  3987253 aacggagggggtaattgactaacgtttgacaatttc 3987288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 24240739 - 24240640
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagca-acggaggggg-taattgactaacgtttgacaatttcgggggtttt 174  Q
    |||||||||| |||||| ||| ||||||||||| | ||| |||||| |||| || || ||||||| |||||||||||| ||| |||||||| ||||||||    
T  24240739 gaggtgccacgtgtacagttaattgccacgtcacagggtgtaacagccaaaacagacagaggggggtaattgactaacatttaacaatttcaggggtttt 24240640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 3346096 - 3346031
Alignment:
Q  100 tgccacgtcatatggtttaacagacaaagcaacggagggggtaattgactaacgtttgacaatttc 165  Q
    |||||||||| | | ||||||| | |||  ||||||||| ||||||||||||||||||||||||||    
T  3346096 tgccacgtcacaagatttaacaaaaaaaaaaacggagggtgtaattgactaacgtttgacaatttc 3346031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 25635000 - 25635058
Alignment:
Q  137 ggggtaattgactaacgtttgacaatttcg--ggggttttgaagtttcttaaatgtcgg 193  Q
    |||||||| || |||||||||||||||||   ||| |||||||||||||||||||||||    
T  25635000 ggggtaatcgattaacgtttgacaatttcaaagggattttgaagtttcttaaatgtcgg 25635058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 41589324 - 41589267
Alignment:
Q  107 tcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatt 163  Q
    ||||||| |||||||| |||| ||| | ||||||||||||||||||||||||| ||||    
T  41589324 tcatatgatttaacagccaaaacaaacagagggggtaattgactaacgtttgataatt 41589267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 30480712 - 30480748
Alignment:
Q  130 aacggaggggg-taattgactaacgtttgacaatttc 165  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30480712 aacggagggggataattgactaacgtttgacaatttc 30480748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 50382066 - 50381907
Alignment:
Q  36 tcatttacccccatgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagc-aacgg 134  Q
    ||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| |    
T  50382066 tcatttatccccatgacgtgacataaaattcagccaatgtggaggtgccacatgtacatttatttgccacgtcatatggtttaacagccaaaacaaacag 50381967  T
Q  135 a-gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaatgtc 191  Q
    | ||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  50381966 aggggggtaattgactaacgtttgacaatttcagaggggatttgaagtttcttaaatgtc 50381907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 50382661 - 50382826
Alignment:
Q  36 tcatttacccccatgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagcaacgga 135  Q
    ||||||||| | |||| ||  ||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||| |  |||| |||  ||    
T  50382661 tcatttacctctatgatgtggcataaaattcagccaatgtggaggtgccacgtgtacatttacttaccacgtcatatggtttaataatcaaaacaaacga 50382760  T
Q  136 --gggggtaattgactaacgtttgacaatttc--gggggt-tttgaagtttcttaaatgtcggggg 196  Q
      |||||||||||||||||||||||| |||||  |||||| |||||||||||||||| ||| ||||    
T  50382761 aggggggtaattgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcagggg 50382826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 31799641 - 31799553
Alignment:
Q  78 aggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc 165  Q
    ||||||||||| | || |||  ||||| |||||| |||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||    
T  31799641 aggtgccacatattcagttaactgccatgtcatagggtttaacagtcaaaacaaacggagggggtaattgactaacatttgacaatttc 31799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 42078649 - 42078683
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaattt 164  Q
    |||||||||||||||||||||||||||||||||||    
T  42078649 aacggagggggtaattgactaacgtttgacaattt 42078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 35942212 - 35942156
Alignment:
Q  133 ggagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||| ||||||||||||    
T  35942212 ggagggggtagttgactaacgtttgacaatttcaggggagttttaaagtttcttaaa 35942156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 28539373 - 28539432
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaattt--cgggggttttgaagtttcttaaa 187  Q
    ||||||| || |||||||||||||||| |||||||   ||||||||||||||||||||||    
T  28539373 aacggagaggataattgactaacgtttaacaattttatgggggttttgaagtttcttaaa 28539432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 50838282 - 50838336
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| |||||| ||||   |||||||||||||||||    
T  50838282 gggggtaattgactaacgtttgataatttcaggggagtttttgaagtttcttaaa 50838336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 54560145 - 54560091
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  54560145 gggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaa 54560091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 1577534 - 1577587
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||  |||| |||||||||||| ||||    
T  1577534 gggggtaattgactaacgtttgtcaatttcagggggtttttgaagtttcctaaa 1577587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 1576598 - 1576544
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||   |||| |||||||||||| ||||    
T  1576598 gggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaa 1576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 43546478 - 43546424
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||| |||||||| ||||||   |||| |||||||||||||||||    
T  43546478 gggggtaattgactgacgtttgataatttcagaggggtttttgaagtttcttaaa 43546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 47471499 - 47471553
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||   |||| |||||||||||| ||||    
T  47471499 gggggtaattgactaacgtttggcaatttcaggggggtttttgaagtttcctaaa 47471553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 54560840 - 54560894
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| ||||||| ||||   |||||||||||| ||||    
T  54560840 gggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaa 54560894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 11147959 - 11147803
Alignment:
Q  36 tcatttaccccc-atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagc-aacg 133  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||| | ||||    
T  11147959 tcatttaccccctatgacgtgacataaaattcaaccaatgtggaggtgccacatgtacatttacttgccatgtc-tatggtttaacagccaaaacaaacg 11147861  T
Q  134 ga-gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    || ||||||||||||||||||||||||||||||  |||   |||||||||||||||||    
T  11147860 gaggggggtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaa 11147803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 11148089 - 11148173
Alignment:
Q  107 tcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||||||||    ||| |||||||||||||||||    
T  11148089 tcatatggtttaacaaccaaaacaaacggagggggtaattgactaacatttgacaatttcataagggtttttgaagtttcttaaa 11148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 31632492 - 31632440
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcgg-gggttttgaagtttcttaaa 187  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  31632492 gggggcaattgactaacgtttgacaatttaggagggttttgaagtttcttaaa 31632440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 31633579 - 31633689
Alignment:
Q  81 tgccacatgtacatttacttgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatt---tcgggggttttga 176  Q
    |||||||||||||| || ||| || |||| | |||||||||| | || ||| ||||||||||||| |||||| |||||||||||   | |||| ||||||    
T  31633579 tgccacatgtacatataattgtcatgtcacagggtttaacagcccaaacaaacggagggggtaatggactaatgtttgacaattttatgggggtttttga 31633678  T
Q  177 agtttcttaaa 187  Q
    |||||||||||    
T  31633679 agtttcttaaa 31633689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 49682052 - 49682108
Alignment:
Q  133 ggagggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||| |||| |||||| ||||  |||||||||||||||||    
T  49682052 ggagggggtaattgactaacgattgataatttcaggggatttttgaagtttcttaaa 49682108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 620582 - 620528
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||   |||| |||||||||||| ||||    
T  620582 gggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaa 620528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 621559 - 621613
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||   |||| |||||||||||| ||||    
T  621559 gggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaa 621613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 21226540 - 21226599
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||| ||||||||   ||| ||||||| |||||||||    
T  21226540 aacggagggggtaattgactaatgtttaacaatttcagagggtttttgaaatttcttaaa 21226599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 23102298 - 23102338
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttcggggg 170  Q
    ||||||||||||||||||| |||| ||||||||||| ||||    
T  23102298 aacggagggggtaattgacaaacgcttgacaatttcagggg 23102338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 21190244 - 21190126
Alignment:
Q  48 atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaa-agcaacggagggggtaattg 146  Q
    |||||||  ||||||||||| ||||||| ||||||||||||| |||||||||  ||||||||||||||||||||| ||| |  || ||||||||||||||    
T  21190244 atgacgtggcataaaattcagccaatgtggaggtgccacatgcacatttactcaccacgtcatatggtttaacagtcaatacaaaaggagggggtaattg 21190145  T
Q  147 actaacgtttgacaatttc 165  Q
    |||||||||||| ||||||    
T  21190144 actaacgtttgataatttc 21190126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 20112293 - 20112353
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  20112293 aacggagggggtaattgactaacgtttgataatttcagtggggtttttgaagtttcttaaa 20112353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 26544695 - 26544607
Alignment:
Q  80 gtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagc-aacggagggggt--aattgactaacgtttgacaatttc 165  Q
    ||||||| |||||| ||| ||||||||||||||| ||||| || |||| | ||| ||||||||  | ||||||||||||||||||||||    
T  26544695 gtgccacgtgtacagttaattgccacgtcatatgatttaatagccaaaacaaacagagggggttaatttgactaacgtttgacaatttc 26544607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 14790784 - 14790730
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  14790784 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 14790730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 45105555 - 45105526
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc 165  Q
    ||||||||||||||||||||||||||||||    
T  45105555 gggggtaattgactaacgtttgacaatttc 45105526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 14791477 - 14791531
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| ||||||| ||||   |||||||||||| ||||    
T  14791477 gggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaa 14791531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 80 - 188
Target Start/End: Original strand, 27368 - 27478
Alignment:
Q  80 gtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagc-aacggagggggtaattgactaacgtttgacaattt-cgggggttttgaa 177  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||||  | || |||| ||    
T  27368 gtgccacatgtacatttacatgccacatcatatggtttaacagccaaaacaaacggagggggtaattgactatcgtttgacaatttgagaggttttttaa 27467  T
Q  178 gtttcttaaat 188  Q
    |||||||||||    
T  27468 gtttcttaaat 27478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 26898 - 26767
Alignment:
Q  36 tcatttaccccc-atgacgtaacataaaattcaaccaatgtagaggtgccacatgtacatttacttgccacgtcatatggtttaacagac-aaagcaacg 133  Q
    |||||||||||| ||||| |  ||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||| ||||||| | |||  ||||    
T  26898 tcatttaccccctatgacatggcataaaattcagccaatgtggaggtgtcacatgtacatttacttgccacatcatatggattaacagccaaaataaacg 26799  T
Q  134 gagggggtaattgactaacgtttgacaatttc 165  Q
    || | |||| ||| ||||||||||||||||||    
T  26798 gatgtggtagttgtctaacgtttgacaatttc 26767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 21012396 - 21012492
Alignment:
Q  100 tgccacgtcatatggtttaacagacaaagcaa-cggagggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaatgtcg 192  Q
    |||||| ||||||||| ||| || |||| ||| | |||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||    
T  21012396 tgccacatcatatggtgtaatagccaaaacaaacagagggggtaattgattaacgtttgacaatttcaagtggggttttgaagtttcttaaatgtcg 21012492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 5347835 - 5347781
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  5347835 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 5347781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 36681150 - 36681095
Alignment:
Q  134 gagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||||||||||||   ||| ||||||||||| |||||    
T  36681150 gagggggtaattgactaacgtttgacaatttcaaagggtttttgaagttttttaaa 36681095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 36681874 - 36681926
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc-gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||| |||||    
T  36681874 gggggtaattgactaacgtttgacaatttcatgggggtttgaagttttttaaa 36681926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 7491363 - 7491325
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcgggggtttt 174  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  7491363 gggggtaattgactaacgtttcacaatttcaggggtttt 7491325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 5348529 - 5348583
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| ||||||| ||||   |||||||||||| ||||    
T  5348529 gggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaa 5348583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 10326808 - 10326896
Alignment:
Q  79 ggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagca-acggaggggg-taattgactaacgtttgacaatttc 165  Q
    |||||||| ||| ||||||  ||||||||||||  | ||||||| |||| || |||||||||| || |||||||| |||||||||||||    
T  10326808 ggtgccacgtgtgcatttaactgccacgtcatagaggttaacagccaaaacagacggaggggggtagttgactaatgtttgacaatttc 10326896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 31808389 - 31808335
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggg---ggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||| |||||||| ||   | |||||||||||||||||    
T  31808389 gggggtaattgactaacgtttaacaatttcaggagagtttttgaagtttcttaaa 31808335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 36429394 - 36429340
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    |||||||||||||| |||||||| |||||| ||||   |||||||||||||||||    
T  36429394 gggggtaattgactgacgtttgataatttcaggggcgtttttgaagtttcttaaa 36429340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 45576046 - 45575987
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaattt--cgggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||||||||||||||||   ||| |||||||||||| |||||    
T  45576046 aacggagggggtaattgactaacgtttgacaattttatgggagttttgaagttttttaaa 45575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 27585401 - 27585348
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    ||||||||| ||||||||||||||||||||  |||| |||||||||||||||||    
T  27585401 gggggtaatcgactaacgtttgacaatttcagggggtttttgaagtttcttaaa 27585348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 36475391 - 36475331
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttcgggg---gttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||||||| |||||||| |||    |||||||||||||||||    
T  36475391 aacggagggggtaattgactaacgtttaacaatttcagggtttcttttgaagtttcttaaa 36475331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 27586005 - 27586061
Alignment:
Q  133 ggagggggtaattgactaacgtttgacaatttcggggg--ttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||||| |||||||| || |  |||||||||||||||||    
T  27586005 ggagggggtaattgactaacgtttaacaatttcaggagttttttgaagtttcttaaa 27586061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 36475994 - 36476048
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||| ||||||||   |||| |||||||||||||||||    
T  36475994 gggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaa 36476048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 47445798 - 47445852
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| |||||| ||||   |||||||||||||||||    
T  47445798 gggggtaattgactaacgtttgataatttcaggggtttttttgaagtttcttaaa 47445852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 47445100 - 47445051
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttc 182  Q
    ||||||||||||||||||||||||||||||   |||| ||||||||||||    
T  47445100 gggggtaattgactaacgtttgacaatttcatgggggtttttgaagtttc 47445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 24646463 - 24646518
Alignment:
Q  139 ggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaatgtc 191  Q
    ||||||||| |||||||||||||||||    ||| |||||||||||||||||||||    
T  24646463 ggtaattgattaacgtttgacaatttcatgagggtttttgaagtttcttaaatgtc 24646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 2120 - 2012
Alignment:
Q  77 gaggtgccacatgtacatttacttgccacgtcatatggtttaacagacaaagca-acggaggggg-taattgactaacgtttgacaatttc--gggggtt 172  Q
    |||||||||| ||| || |||  |||||||||| | ||| |||||| |||| || |||||||||| |||||||||||||||| ||||||||  |||| ||    
T  2120 gaggtgccacgtgtgcagttaactgccacgtcacagggtgtaacagccaaaacagacggaggggggtaattgactaacgtttaacaatttcagggggttt 2021  T
Q  173 ttgaagttt 181  Q
    |||||||||    
T  2020 ttgaagttt 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 15347544 - 15347490
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  15347544 gggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaa 15347490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 30710302 - 30710355
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||||||||| |||||||  |||| |||||||||||| ||||    
T  30710302 gggggtaattgactaacgtttggcaatttcagggggtttttgaagtttcctaaa 30710355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 15348219 - 15348274
Alignment:
Q  135 agggggtaattgactaacgtttgacaatttcggggg---ttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||| ||||   |||||||||||| ||||    
T  15348219 agggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaa 15348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 2953383 - 2953355
Alignment:
Q  137 ggggtaattgactaacgtttgacaatttc 165  Q
    |||||||||||||||||||||||||||||    
T  2953383 ggggtaattgactaacgtttgacaatttc 2953355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 17732839 - 17732893
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||| ||||||||||| ||||||   |||| |||||||||||||||||    
T  17732839 gggggtaattggctaacgtttgataatttcaggggggtttttgaagtttcttaaa 17732893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 4592739 - 4592685
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  4592739 gggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaa 4592685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 33002994 - 33002935
Alignment:
Q  130 aacggagggggtaattgactaacgtttgacaatttc--gggggttttgaagtttcttaaa 187  Q
    |||||||||||||||| |||||||||||||||||||   | | |||||||||||||||||    
T  33002994 aacggagggggtaattaactaacgtttgacaatttcatcgagtttttgaagtttcttaaa 33002935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 45114916 - 45114970
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttc---gggggttttgaagtttcttaaa 187  Q
    |||||||||| |||||||||||||||||||    |||||||||||||||||||||    
T  45114916 gggggtaattaactaacgtttgacaatttcatgaggggttttgaagtttcttaaa 45114970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 10256514 - 10256561
Alignment:
Q  137 ggggtaattgactaacgtttgacaatttc--gggggttttgaagtttc 182  Q
    ||||||||||||||||||||| |||||||  |||| ||||||||||||    
T  10256514 ggggtaattgactaacgtttggcaatttcagggggtttttgaagtttc 10256561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 22539136 - 22539164
Alignment:
Q  137 ggggtaattgactaacgtttgacaatttc 165  Q
    |||||||||||||||||||||||||||||    
T  22539136 ggggtaattgactaacgtttgacaatttc 22539164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 33167 - 33201
Alignment:
Q  136 gggggtaattgactaacgtttgacaatttcggggg 170  Q
    |||||||||||||||||||||||||||||| ||||    
T  33167 gggggtaattgactaacgtttgacaatttcagggg 33201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University