View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_4 (Length: 556)
Name: NF3084_low_4
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 222 - 542
Target Start/End: Complemental strand, 38548758 - 38548441
Alignment:
| Q |
222 |
ttaatttaaatatttgtattcttaaaatgcctataattggtctttggtatgatgcggtggtagatgatgaaattgagcacaagatagttcacacgaggag |
321 |
Q |
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| T |
38548758 |
ttaatttaaatatttgtattcttaaaatgcctataattggtctttggaatgatgcggtggtagatgatgaaattgagcacaagatagttcacatgaggag |
38548659 |
T |
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| Q |
322 |
ttcatcaaaccccttttgcatagcttattcaaatgtttctcatgatatgcgtcttttgaacaatctttggagtgacaatggtgattgagaagatcattgt |
421 |
Q |
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| T |
38548658 |
ttcatcaaaacccttttgcatagcttattcaaatgttgctcatgatatgcgtcttttgaacaatctttgaagtgacaatggtgattgagaatatcattgt |
38548559 |
T |
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| Q |
422 |
cttacataatacgttttctttaaagttgtctcgaagtccaaacaaataaaatnnnnnnnctatattttcaatgttgaatcttagtataatatgcttcaat |
521 |
Q |
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| T |
38548558 |
cttacataatacgttttctttaaagttatctcgaagttcaaacaaataaaataaaaaaactatattttcaatgttgaatct---tataatatgcttcaat |
38548462 |
T |
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| Q |
522 |
gatgttttccttttcactttt |
542 |
Q |
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| T |
38548461 |
gatgttttccttttcactttt |
38548441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 38548947 - 38548808
Alignment:
| Q |
1 |
ttacattattacctttgctgctcagtgatgcatgcaagccctcattggtgtcactttcattcaccaacatttcatgtcaagaacaacaaattgcgaaaca |
100 |
Q |
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| T |
38548947 |
ttacattattacatttgctgctcagtgatgcatgcatgccctcattggtgtcactttcattcaccaacatttcatgtcaagaacaacagattgcgaaaca |
38548848 |
T |
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| Q |
101 |
tggagtcctgctaaatcagtactttggagttagtgatatc |
140 |
Q |
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| T |
38548847 |
tggagtcctgctaaatcagtactttggagttagtgatatc |
38548808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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