View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_5 (Length: 544)
Name: NF3084_low_5
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 39446733 - 39447256
Alignment:
| Q |
17 |
tagtgattacacactaattactaaacaattcacaataacataatatatattcaatcacaattaatcaaactaccaatttacacatattccctaataatca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39446733 |
tagtgattacacactaattactaaacaattcacaataacataatatatattcaatcacaattaatcaaactaccaatttacacatattccctaataatca |
39446832 |
T |
|
| Q |
117 |
atcatttcaataacacaatgtta--ctagaaagtagcaacacatttgcatagcaccaaacattatttgactaacattctaa----ttatttgcatgataa |
210 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |
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| T |
39446833 |
atcatttcaataacacaatgttatactagaaagtagcaacacatttgcatagcaccaaacattatttgactaacattctaagacctgttaagcatgataa |
39446932 |
T |
|
| Q |
211 |
ttaacgacaacattcaatagctttctttgggctatattttccaaaatcttccaaccataacgatcgtggagcttgctcatattctgacatcatcactgca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39446933 |
ttaacgacaacattcaatagctttctttgggctatattttccaaaatcttccaaccataacgatcctggagcttgctcatattctgacatcatcactgca |
39447032 |
T |
|
| Q |
311 |
gtcatgaaaacacatgccttcccacaccttcacttcttattctctactttggacttctcactttcttcccatgtcttcaatagcaaaacctgtataccgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39447033 |
gtcatgaaaacacatgccttcccacaccttcacttcttattctctactttggacttctcactttcttcccatgtcttcaatagcaaaacctgtataccgc |
39447132 |
T |
|
| Q |
411 |
ataaatgcataaagacacttgtttatgaagataaatgctacgnnnnnnnntaattattggttaaccatcacatctagaaaacatatttgaagagaggagc |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39447133 |
ataaatgcataaagacacttgtttatgaagataaatgctatgaaaaaaaataattattggttaaccatcacatctagaaaacatatttgaagagaggagc |
39447232 |
T |
|
| Q |
511 |
tagtaagtataatcatatattcat |
534 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
39447233 |
tagtaagtataatcatatattcat |
39447256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 27283662 - 27283335
Alignment:
| Q |
12 |
atcagtagtgattacacactaattactaaacaattcacaataacataa---tatatattcaatcacaattaatcaaactaccaatttacacatattccct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
27283662 |
atcaatagtgattacacactaattactaaacaattcacaataacgtaacaatatatattcaatcacaattaatcaaactaccaatttacacatatttcgt |
27283563 |
T |
|
| Q |
109 |
aataatcaatcatttcaataacacaatgttactagaaagtagcaacacatttgcatagcaccaaacattatttgactaacattctaa----ttatttgca |
204 |
Q |
| |
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|| ||||||||| |||||||| ||| | |||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
27283562 |
aacaatcaatcagttcaataaaacactattactaaaaagcagcaacacattcgcatagcaccaaacactatttgactaacattctaagacctgtcaagca |
27283463 |
T |
|
| Q |
205 |
tgataattaacgacaacattcaatagctttcttt-gggctatattttccaaaatcttccaaccataacgatcgtggagcttgctcatattctgacatcat |
303 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||||||| || |
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|
| T |
27283462 |
tgataattaaagacaacactcaatagctttctttggggctatattttccaaaaccatccaaccataacgatcctggaacttgctcatattctgacattat |
27283363 |
T |
|
| Q |
304 |
cactgcagtcatgaaaacacatgccttc |
331 |
Q |
| |
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| |||||||||| ||||||| ||||||| |
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|
| T |
27283362 |
ctctgcagtcatcaaaacacttgccttc |
27283335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 384 - 534
Target Start/End: Complemental strand, 27283304 - 27283148
Alignment:
| Q |
384 |
tcttcaatagcaaaacctgtataccgcataaatgcataaagaca----cttgtttatgaagataaatgctacgnnnnnnnntaattattggttaaccatc |
479 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||| |
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| T |
27283304 |
tcttcaatagcaaaacctgtataccacataaatgcataaagaacgaagcttgtttatgaagataaatgctatgacaaaaa--aattattgggtaaccatc |
27283207 |
T |
|
| Q |
480 |
acatctagaaaacatatttgaagagaggagctag----taagtataatcatatattcat |
534 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||| |
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|
| T |
27283206 |
atatctagaaaacatatttgaatagatgagctagtaattaagtataaacatatattcat |
27283148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 58 - 389
Target Start/End: Complemental strand, 9775042 - 9774708
Alignment:
| Q |
58 |
aatatatattcaatcacaattaatcaaactaccaatttacacatattccctaataatcaatcatttcaataacacaatgttactagaaa--gtagcaaca |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| | |||||||| | ||||| ||| |
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|
| T |
9775042 |
aatatatattccatcacaattaatcaaactaccaattaacacatattccctaacaatctatcatttcaataacacactattactagagagtgtagctaca |
9774943 |
T |
|
| Q |
156 |
catttgcatagcaccaaacattatttgactaacattct---aattatt-tgcatgataattaacgacaacattcaatagctttctttgggctatattttc |
251 |
Q |
| |
|
|||||| |||||| ||| ||||||||| | ||| ||| | || || ||||||||||| | || |||||||||||| |||||||||||||||||||| |
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|
| T |
9774942 |
catttgtatagcaacaaccattatttg-tttacagtctacgacttcttaagcatgataattgaagataacattcaatagttttctttgggctatattttc |
9774844 |
T |
|
| Q |
252 |
caaaatc-------ttccaaccataacgatcgtggagcttgctcatattctgacatcatcactgcagtcatgaaaacacatgccttcccacaccttcact |
344 |
Q |
| |
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| ||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| |||| |
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|
| T |
9774843 |
cgaaaccttccaagttccaactataacgatccatgagcttgctcatattctgacatcatcactgcaatcatcaacacacatgccttc-----acttc--- |
9774752 |
T |
|
| Q |
345 |
tcttattctctactttggacttctcactttcttcccatgtcttca |
389 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||| |||| |
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|
| T |
9774751 |
-cttattctctactctagagttctcactttcttcccatgtattca |
9774708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 38210828 - 38210917
Alignment:
| Q |
78 |
taatcaaactaccaattta-cacatattccctaataatcaatcatttcaataacacaatgttactagaaagtagcaacacatttgcatag |
166 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||||||||| |||| |
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|
| T |
38210828 |
taatcaaactaccaaattaacacatattccctaacaatcaatcatttcactaacactttattactagcaagtagcaacacatttgtatag |
38210917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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