View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3084_low_8 (Length: 451)
Name: NF3084_low_8
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_8 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0169 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 47051987 - 47052243
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47051987 |
tgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
47052086 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47052087 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaaga |
47052186 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47052187 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
47052243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 19657925 - 19658201
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19657925 |
tgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaattt |
19658024 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatga---------------------ttgatttgggaaaggaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19658025 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttggtgatgaaattggttgatttgggaaaggaa |
19658124 |
T |
|
| Q |
180 |
ggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19658125 |
ggaaaaagaaatggaagaagaggattgagggacagagagctaacgggagtgagaggagaaaggaaa-ggaaagttatg |
19658201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 34899575 - 34899484
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaaccc |
92 |
Q |
| |
|
|||||||||||||| | | |||||||||| |||||||||||| ||| | ||| ||||||| ||||| | |||| |||||||||||||||| |
|
|
| T |
34899575 |
tgtaagttgataaatacatctcaaagagtcttaatgagcaactttcatcaaatgagtattcttcttcttcctcaaggcacaaaccctaaccc |
34899484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 4707939 - 4708195
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4707939 |
tgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
4708038 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4708039 |
ctaccgatagagcttgaatatgaagttgctttacttagatgaccaattattcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaaga |
4708138 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4708139 |
ggaatgagggacagagagctaacggaagtgagaggagaatggaaagggaaagttatg |
4708195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 21190357 - 21190308
Alignment:
| Q |
402 |
tgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21190357 |
tgttgtttcttaaaacaaattctacattttttatgaacattgatgaaagt |
21190308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 15998335 - 15998265
Alignment:
| Q |
72 |
tcaaagcacaaaccctaacccccaaaattctaccaatagagcttg-aatatgaagttgctttacttagatg |
141 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||| |||||||| | ||||| ||||||| |
|
|
| T |
15998335 |
tcaaagcacacaccctaacccccaaaattctaccatgagagcttgcaatatgaaatagctttgattagatg |
15998265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 21190822 - 21190871
Alignment:
| Q |
402 |
tgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
21190822 |
tgttgtttcttaaaacaaattctacattttttatgaacaatgatgaaagt |
21190871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 42784230 - 42783975
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42784230 |
tgtaagttgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
42784131 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42784130 |
ctaccaatagagcttgaatatgaagttgctttacttagatgaccaattattcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaaga |
42784031 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42784030 |
ggaatgagggacagagagctaacggaagtga-aggagaatggaaagggaaagttatg |
42783975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 810133 - 810382
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
810133 |
tgtaagttgataaatatacctcagggagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
810232 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
810233 |
ctaccaatagagcttgaatatgaagttgctttacttagatgaccaattattcttaaggatgattgatttgggaaaggaaggaaaaagaaatggaagaaga |
810332 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaa |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
810333 |
ggaatgagggacagagagctaacggaagtgagaggagaatggaaagggaa |
810382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 27560911 - 27560634
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27560911 |
tgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaattt |
27560812 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgat---------------------ttgggaaaggaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27560811 |
ataccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttggtgatgaaattggttgatttgggaaaggaa |
27560712 |
T |
|
| Q |
180 |
ggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
27560711 |
ggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtgataggagaaaggaaagggaaagttatg |
27560634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 37457352 - 37457075
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37457352 |
tgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaattt |
37457253 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgat---------------------ttgggaaaggaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37457252 |
ataccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttggtgataaaattggttgatttgggaaaggaa |
37457153 |
T |
|
| Q |
180 |
ggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
37457152 |
ggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtgataggagaaaggaaagggaaagttatg |
37457075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 45114667 - 45114728
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
45114667 |
ttgttgataggttgttgtttcttaaaacaaattctgcattttttataaacattgatgaaagt |
45114728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 27560612 - 27560543
Alignment:
| Q |
269 |
cccacgtgagtgtctagtaagttctacaatct--attattattaatacttctcatacttgattactttct |
336 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
27560612 |
cccacgtgtgtgtctagtaagttctagtatatccattatcattaataattctcatacttaattactttct |
27560543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5735736 - 5735992
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||| ||| ||||| |||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
5735736 |
tgtatgtttataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctcctattacttcaaagcacaaaccctaacccccaaattt |
5735835 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5735836 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatggttgatttgggaaaggaaggaaaaagaaatagaagaaga |
5735935 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5735936 |
ggaatgagggacagagagataacgggagtgagaggagaaaggaaagggaaagttatg |
5735992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5772848 - 5773104
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||| ||| ||||| |||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
5772848 |
tgtatgtttataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctcctattacttcaaagcacaaaccctaacccccaaattt |
5772947 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttgggaaaggaaggattaagaaatggaagaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5772948 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatggttgatttgggaaaggaaggaaaaagaaatagaagaaga |
5773047 |
T |
|
| Q |
201 |
ggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5773048 |
ggaatgagggacagagagataacgggagtgagaggagaaaggaaagggaaagttatg |
5773104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 50382166 - 50382117
Alignment:
| Q |
402 |
tgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
50382166 |
tgttgtttcttaaaacaaattctgcattttttatgaacattgatgaaagt |
50382117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 5736013 - 5736081
Alignment:
| Q |
269 |
cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt |
334 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
5736013 |
cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt |
5736081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 5773125 - 5773193
Alignment:
| Q |
269 |
cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt |
334 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
5773125 |
cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt |
5773193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5742989 - 5743266
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5742989 |
tgtaagtcgataaatatacctcaaagagtctcaatgagcaactctcacaatatgggtattctccttctacttcaaagcacaaaccctaacccccaaattt |
5743088 |
T |
|
| Q |
101 |
ctaccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatga---------------------ttgatttgggaaaggaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5743089 |
ataccaatagagcttgaatatgaagttgctttacttagatgatcaattattcttaaggatgattgatttggtgataaaattggttgatttgggaaaggaa |
5743188 |
T |
|
| Q |
180 |
ggattaagaaatggaagaagaggaatgagggacagagagctaacgggagtgagaggagaatggaaagggaaagttatg |
257 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5743189 |
ggaaaaagaaatggaagaagaggaatgagggacagagagctaacgggagtgataggagaaaggaaagggaaagttatg |
5743266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 11148080 - 11148019
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
11148080 |
ttgttgataggttgttgtttcttaaaacaaattctgcattttttatggacattgatgaaagt |
11148019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 32390264 - 32390203
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
32390264 |
ttgttgataggttgttgtttcttaaaacaaattctgcattttttatgaacattgatgaaagt |
32390203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 23256518 - 23256457
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
23256518 |
ttgttgataggttgttgtttcttaaaacaaattctgcattttttatgaatattgatgaaagt |
23256457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 32390688 - 32390749
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
32390688 |
ttgttgataggttgttgtttcttaaaacaaattctgcattttttataaacatagatgaaagt |
32390749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6023864 - 6023969
Alignment:
| Q |
1 |
tgtaagttgataaaaatacttcaaagagtcgtaatgagcaactctcacaagatgggtattctccttctacttcaaagcacaaaccctaacccccaaaatt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||| | ||| ||||||||||| |||| | |||| |||||| |||||||||||| ||||||||| |
|
|
| T |
6023864 |
tgtaagttgataaatatacctcaaagagtctcaatgaacgactttcacaagatggatatttttcttcctattcaaaacacaaaccctaa-ccccaaaatc |
6023962 |
T |
|
| Q |
101 |
ctaccaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
6023963 |
ctaccaa |
6023969 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 27021 - 26961
Alignment:
| Q |
390 |
ttgttgatagggtgttgtttcttaaaacaatttctgtattttttatgaacattgatgaaagt |
451 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||| ||||||||| ||||||||||||||| |
|
|
| T |
27021 |
ttgttgataggttgttgtttcttaaaataaattctgcattttttat-aacattgatgaaagt |
26961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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