View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3084_low_9 (Length: 417)
Name: NF3084_low_9
Description: NF3084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3084_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 6897088 - 6896813
Alignment:
| Q |
20 |
agaacagaacactgaattgcataactaacattaacataaaaatgtaccacatgaggtatatatacattatactctacacaaacttgcatttaatctaaat |
119 |
Q |
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| T |
6897088 |
agaatagaacattgaattgcataactaaaatgaacataaaaatgtaccacatgaggtatatatacattatactctacacacacttgcaattggtctacat |
6896989 |
T |
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| Q |
120 |
tttctatttaaagtaacaattaacgcactgcaaaattgctgaagaaagcattaaaaataaagggattcccctctctctagcatcttatagtagccatttt |
219 |
Q |
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| T |
6896988 |
tttctatttcaagtaacaattaatgcactgcaaaattgctgaagaaagcattaaaaataaagggattcccctctctctagcatcctatagtagccattt- |
6896890 |
T |
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| Q |
220 |
nnnnnnnnnnnnnnnnttaatatacatataatattttgtgttttttagcaaacattattaattagaaatatgctatta |
297 |
Q |
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| T |
6896889 |
-aaaaaaaaataaaaattaatatacatataattttttggtttttttagcaaacattattaattagaaatatgatatta |
6896813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 6896770 - 6896709
Alignment:
| Q |
340 |
atccatgaaaaacaaccaccttgtctgcaaagttgttcatctttcttctctttcaatgtttc |
401 |
Q |
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| T |
6896770 |
atccatgaaaagcaaccaccttgtctgcaaagttgttcatctttcttctctttcaatgtttc |
6896709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 5638697 - 5638658
Alignment:
| Q |
378 |
atctttcttctctttcaatgtttcagtatacatggaaatc |
417 |
Q |
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| T |
5638697 |
atctttcttctcttttagtgtttcagtatacatggaaatc |
5638658 |
T |
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