View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_11 (Length: 242)
Name: NF3086_low_11
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 46213438 - 46213243
Alignment:
| Q |
17 |
cagagaatggtgaaacttgatcggttgacatgattaattaggacttaagaatgaacaaaagacccaaatnnnnnnnnnnnnnnnnnnnnnnnnnacaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
46213438 |
cagagaatggtgaaacttgatcggttgacatgattaattaggccttaagaatgaacaaaagacccaaattatatattctatattataatatattacaaaa |
46213339 |
T |
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| Q |
117 |
tgggtggcatagaattcttagctagctataacaatggnnnnnnngatgtatagctgaatactgaaggaatttaaaagagaaaatgatatatagagagaga |
216 |
Q |
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|||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46213338 |
tgggtggcatagaattct----tagctataacaat-gaaaaaaagatgtatagctgaatactgaaggaatttaaaagagaaaatgatatatagagagaga |
46213244 |
T |
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