View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_2 (Length: 488)
Name: NF3086_low_2
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 184 - 485
Target Start/End: Original strand, 34869082 - 34869383
Alignment:
| Q |
184 |
gtgagggacttaaattgctccttcaccttagaagccacatattctgagttcattgttactttactttgttattattgtacaagtacattgctttgtggaa |
283 |
Q |
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| T |
34869082 |
gtgagggacttaaattgctccttcaccttagaagccagatattctaagttcattgttactttactttgttattattgtacaagtacattgctttgtggaa |
34869181 |
T |
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| Q |
284 |
tagacaaaaatgagtgttatttccaattaaatccaaagtggggatctagtattatcttctgctgtttttacctatttgaaggtgatgggggtgagattca |
383 |
Q |
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| T |
34869182 |
tagacaaaaatgagtgttatttccaattaaatccaaagtggggatctagtattatcttatgctgtttttacctatttgaaggtgatgggggtgagattca |
34869281 |
T |
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| Q |
384 |
agcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacattggtggttgtgattgtaaggccacactccctttg |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34869282 |
agcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacattggtggttgtgattgtaaggccacactccttttg |
34869381 |
T |
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| Q |
484 |
ct |
485 |
Q |
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|| |
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| T |
34869382 |
ct |
34869383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 34868447 - 34868574
Alignment:
| Q |
19 |
gttcaagcaaaaaagagcaacacctatgccttgccccacctaatcccactcttcttt-catttccagcaaactcttccatgttctcgtccactcatcaga |
117 |
Q |
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| T |
34868447 |
gttcaagcaaaaaagagcaacacctatgccttgccccacctaatcccactcttcttttcatttccagcaaactcttccatattctcgtccactcatcaga |
34868546 |
T |
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| Q |
118 |
ggcaagaagatccttccccatcaaccct |
145 |
Q |
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| T |
34868547 |
ggcaagaagatccttccccatcaaccct |
34868574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 350 - 475
Target Start/End: Original strand, 34864865 - 34864990
Alignment:
| Q |
350 |
tttacctatttgaaggtgatgggggtgagattcaagcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacat |
449 |
Q |
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| T |
34864865 |
tttacctatttgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacat |
34864964 |
T |
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| Q |
450 |
tggtggttgtgattgtaaggccacac |
475 |
Q |
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| T |
34864965 |
tggtggttgtgactgtaaggctacac |
34864990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 13381171 - 13381077
Alignment:
| Q |
374 |
gtgagattcaagcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacattggtggttgtgattgtaag |
468 |
Q |
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||||||| |||| ||||||||| ||||||| || || ||||| || || || || |||||||| ||||| ||||||||||| ||||| |||||| |
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| T |
13381171 |
gtgagatccaaggagcattagcccagtggactggtcagaggactgtgccaaatgtttttattggcggcaaccacattggtggctgtgactgtaag |
13381077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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