View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_3 (Length: 464)
Name: NF3086_low_3
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 33388427 - 33387972
Alignment:
| Q |
1 |
atcttcagccgcagacctatcctggaattttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttga |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388427 |
atcttcagccgcagacctatcctgaaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttga |
33388328 |
T |
|
| Q |
101 |
cttcatggaccctcctgctcctgaaaccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388327 |
cttcatggaccctcctgctcctgaaaccttaatgcgtgctttggaagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggt |
33388228 |
T |
|
| Q |
190 |
gagattatgagtgagtttccattggaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33388227 |
gagattatgagtgagtttccattggaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatttctgcga |
33388128 |
T |
|
| Q |
290 |
tggtatcggtacccaattgctttattcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcac |
389 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388127 |
tggtagcggtacccaattgctttattcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcac |
33388028 |
T |
|
| Q |
390 |
actattgaacgtataccatgcctacaagcaaaacaatgaggatccatcttggtgct |
445 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388027 |
actattgaacgtataccatgcctacaagcaaaacaatgaggatccatcttggtgct |
33387972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 20816677 - 20817132
Alignment:
| Q |
1 |
atcttcagccgcagacctatcctggaattttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
20816677 |
atcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttga |
20816776 |
T |
|
| Q |
101 |
cttcatggaccctcctgctcctgaaaccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggt |
189 |
Q |
| |
|
||| |||||||||||||| || ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
20816777 |
ctttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttgggtgcaatggatgatgaaggtaacttaacaaagttgggt |
20816876 |
T |
|
| Q |
190 |
gagattatgagtgagtttccattggaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcga |
289 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
20816877 |
aagattatgagtgagtttccgttggaccctcagatgtcaaagatgcttgttgttagccctgagttcaactgttcaaatgagattctgtcaatttctgcga |
20816976 |
T |
|
| Q |
290 |
tggtatcggtacccaattgctttattcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcac |
389 |
Q |
| |
|
|| | || ||||||||||||||||| ||||||| ||| |||||| |||||| |||||||| |||||||||||| |||| ||||||||||||||||||| |
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|
| T |
20816977 |
tgctgtcagtacccaattgctttatccggcctaaggaggcacaaatagctgcggatgaagcgaaagctaggtttatacacgttgatggagatcatctcac |
20817076 |
T |
|
| Q |
390 |
actattgaacgtataccatgcctacaagcaaaacaatgaggatccatcttggtgct |
445 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| |||||| | |||||||||| |
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|
| T |
20817077 |
actcttgaatgtatatcatgcctacaagcaaaacaacgaggatgcttcttggtgct |
20817132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 38779468 - 38779167
Alignment:
| Q |
1 |
atcttcagccgcagacctatcctggaattttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38779468 |
atcttcagccgcagacctatcctgaaattttgagatctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttga |
38779369 |
T |
|
| Q |
101 |
cttcatggaccctcctgctcctgaaaccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggt |
189 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || |||||||||||||||| |||||| | |||||||||||||||||||||||||| ||| |
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|
| T |
38779368 |
cttcatggaccctcctgcccctgaaaccttgatgcgtgctttggaagtgttgaattacttgggtgcactggatgatgaaggtaacttaacaaagcttggt |
38779269 |
T |
|
| Q |
190 |
gagattatgagtgagtttccattggaccctcagatgtcaaagatgcttattgttagtccagagttcaactgttcaaacgagattctttcaatatctgcga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||||| ||||||| |
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|
| T |
38779268 |
gagattatgagtgagtttccattggaccctcagatgtcaaagatgcttgttgttagtcctgagttcaactgttcgaatgagattctttcaatttctgcga |
38779169 |
T |
|
| Q |
290 |
tg |
291 |
Q |
| |
|
|| |
|
|
| T |
38779168 |
tg |
38779167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 38778748 - 38778622
Alignment:
| Q |
298 |
gtacccaattgctttattcggcctagggatgcacaagaagctgcagatgaagcaaaagctaggtttgcacacattgatggagatcatctcacactattga |
397 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
38778748 |
gtacccaattgctttatccggcctagggaggcacaaaaagctgcggatgaagccaaagctaggtttggacacattgatggagatcatctcacactcttga |
38778649 |
T |
|
| Q |
398 |
acgtataccatgcctacaagcaaaaca |
424 |
Q |
| |
|
| ||||||||||||||||||||||||| |
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|
| T |
38778648 |
atgtataccatgcctacaagcaaaaca |
38778622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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