View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_4 (Length: 370)
Name: NF3086_low_4
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 6415267 - 6414925
Alignment:
| Q |
17 |
cagattgtacatggatagaataaagcgccacaacatgcgatatgctttcaaattccaaaactcacacgggcagctgtactaataactatgctagctggga |
116 |
Q |
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| T |
6415267 |
cagattgtacatggatagaataaagcgccacaacatgcgatatgctttcaaattccaaaactcacacgggcagctgtactaataactatgctagctggga |
6415168 |
T |
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| Q |
117 |
ttcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattcaag |
216 |
Q |
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| T |
6415167 |
ttcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattcaag |
6415068 |
T |
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| Q |
217 |
ctgactatactgtttgtacattaattaattttgatccctgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcaccat |
316 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6415067 |
ctgactatactgtttgtacattaattaattttggtccttgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcaccat |
6414968 |
T |
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| Q |
317 |
gagttgtcaaaaacattaacaagaacaagttgtatcctttcat |
359 |
Q |
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| T |
6414967 |
gagttgtcaaaaacattaacaagaacaagttgtatcctttcat |
6414925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 23287917 - 23287969
Alignment:
| Q |
307 |
gaatcaccatgagttgtcaaaaacattaacaagaacaagttgtatcctttcat |
359 |
Q |
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| T |
23287917 |
gaatcaccatgagttgtcaaaaacattaacaagaacaaattgtatcctttcat |
23287969 |
T |
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