View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_5 (Length: 336)
Name: NF3086_low_5
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 3094244 - 3093921
Alignment:
| Q |
1 |
tgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatc |
100 |
Q |
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| T |
3094244 |
tgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatc |
3094145 |
T |
|
| Q |
101 |
tattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094144 |
tattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcg |
3094045 |
T |
|
| Q |
201 |
gtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094044 |
gtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctct |
3093945 |
T |
|
| Q |
301 |
ctattgcttttgctatggcttctg |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3093944 |
ctattgcttttgctatggcttctg |
3093921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3085398 - 3085078
Alignment:
| Q |
1 |
tgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatc |
100 |
Q |
| |
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|||| |||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || |||||||| |
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| T |
3085398 |
tgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatc |
3085299 |
T |
|
| Q |
101 |
tattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcg |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3085298 |
tattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatca |
3085199 |
T |
|
| Q |
201 |
gtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctct |
300 |
Q |
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||||||||||||||||||||||| ||||||||||| || | | ||| || ||||||||||||||||| || ||||||||||| ||||| || |||||| |
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| T |
3085198 |
gtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctcc |
3085099 |
T |
|
| Q |
301 |
ctattgcttttgctatggctt |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3085098 |
ctattgcttttgctatggctt |
3085078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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